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Synthetic biology open language (SBOL) version 3.0.0.
J Integr Bioinform. 2020 Jun 25;17(2-3):20200017. doi: 10.1515/jib-2020-0017.
J Integr Bioinform. 2020.
PMID: 32589605
Free PMC article.
Synthetic biology open language visual (SBOL visual) version 2.2.
Baig H, Fontanarrosa P, Kulkarni V, McLaughlin J, Vaidyanathan P, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Moreno AG, Gorochowski T, Grunberg R, Luna A, Madsen C, Misirli G, Nguyen T, Le Novere N, Palchick Z, Pocock M, Roehner N, Sauro H, Scott-Brown J, Sexton JT, Stan GB, Tabor JJ, Vilar MV, Voigt CA, Wipat A, Zong D, Zundel Z, Beal J, Myers C.
Baig H, et al. Among authors: fontanarrosa p.
J Integr Bioinform. 2020 Jun 10;17(2-3):20200014. doi: 10.1515/jib-2020-0014.
J Integr Bioinform. 2020.
PMID: 32543457
Free PMC article.
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The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering.
McLaughlin JA, Beal J, Mısırlı G, Grünberg R, Bartley BA, Scott-Brown J, Vaidyanathan P, Fontanarrosa P, Oberortner E, Wipat A, Gorochowski TE, Myers CJ.
McLaughlin JA, et al. Among authors: fontanarrosa p.
Front Bioeng Biotechnol. 2020 Sep 11;8:1009. doi: 10.3389/fbioe.2020.01009. eCollection 2020.
Front Bioeng Biotechnol. 2020.
PMID: 33015004
Free PMC article.
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Stochastic Hazard Analysis of Genetic Circuits in iBioSim and STAMINA.
Buecherl L, Roberts R, Fontanarrosa P, Thomas PJ, Mante J, Zhang Z, Myers CJ.
Buecherl L, et al. Among authors: fontanarrosa p.
ACS Synth Biol. 2021 Oct 15;10(10):2532-2540. doi: 10.1021/acssynbio.1c00159. Epub 2021 Oct 4.
ACS Synth Biol. 2021.
PMID: 34606710
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Genetic Circuit Dynamics: Hazard and Glitch Analysis.
Fontanarrosa P, Doosthosseini H, Borujeni AE, Dorfan Y, Voigt CA, Myers C.
Fontanarrosa P, et al.
ACS Synth Biol. 2020 Sep 18;9(9):2324-2338. doi: 10.1021/acssynbio.0c00055. Epub 2020 Aug 22.
ACS Synth Biol. 2020.
PMID: 32786351
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Investigating and Modeling the Factors That Affect Genetic Circuit Performance.
Zilberzwige-Tal S, Fontanarrosa P, Bychenko D, Dorfan Y, Gazit E, Myers CJ.
Zilberzwige-Tal S, et al. Among authors: fontanarrosa p.
ACS Synth Biol. 2023 Nov 17;12(11):3189-3204. doi: 10.1021/acssynbio.3c00151. Epub 2023 Nov 2.
ACS Synth Biol. 2023.
PMID: 37916512
Free PMC article.
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Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop.
Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, Johnson T, Vaughn MW, Gaffney N, Urrutia J, Gopaulakrishnan S, Biggers V, Higa TR, Mosqueda LA, Gameiro M, Gedeon T, Mischaikow K, Beal J, Bartley B, Mitchell T, Nguyen TT, Roehner N, Haase SB.
Cummins B, et al. Among authors: fontanarrosa p.
Synth Biol (Oxf). 2023 Mar 28;8(1):ysad005. doi: 10.1093/synbio/ysad005. eCollection 2023.
Synth Biol (Oxf). 2023.
PMID: 37073283
Free PMC article.
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SynBioSuite: A Tool for Improving the Workflow for Genetic Design and Modeling.
Sents Z, Stoughton TE, Buecherl L, Thomas PJ, Fontanarrosa P, Myers CJ.
Sents Z, et al. Among authors: fontanarrosa p.
ACS Synth Biol. 2023 Mar 17;12(3):892-897. doi: 10.1021/acssynbio.2c00597. Epub 2023 Mar 8.
ACS Synth Biol. 2023.
PMID: 36888740
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