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A cryptic plasmid is among the most numerous genetic elements in the human gut.
Fogarty EC, Schechter MS, Lolans K, Sheahan ML, Veseli I, Moore RM, Kiefl E, Moody T, Rice PA, Yu MK, Mimee M, Chang EB, Ruscheweyh HJ, Sunagawa S, Mclellan SL, Willis AD, Comstock LE, Eren AM. Fogarty EC, et al. Cell. 2024 Feb 29;187(5):1206-1222.e16. doi: 10.1016/j.cell.2024.01.039. Cell. 2024. PMID: 38428395 Free article.
Community-led, integrated, reproducible multi-omics with anvi'o.
Eren AM, Kiefl E, Shaiber A, Veseli I, Miller SE, Schechter MS, Fink I, Pan JN, Yousef M, Fogarty EC, Trigodet F, Watson AR, Esen ÖC, Moore RM, Clayssen Q, Lee MD, Kivenson V, Graham ED, Merrill BD, Karkman A, Blankenberg D, Eppley JM, Sjödin A, Scott JJ, Vázquez-Campos X, McKay LJ, McDaniel EA, Stevens SLR, Anderson RE, Fuessel J, Fernandez-Guerra A, Maignien L, Delmont TO, Willis AD. Eren AM, et al. Among authors: fogarty ec. Nat Microbiol. 2021 Jan;6(1):3-6. doi: 10.1038/s41564-020-00834-3. Nat Microbiol. 2021. PMID: 33349678 Free PMC article.
A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome.
Chitale P, Lemenze AD, Fogarty EC, Shah A, Grady C, Odom-Mabey AR, Johnson WE, Yang JH, Eren AM, Brosch R, Kumar P, Alland D. Chitale P, et al. Among authors: fogarty ec. Nat Commun. 2022 Nov 18;13(1):7068. doi: 10.1038/s41467-022-34853-x. Nat Commun. 2022. PMID: 36400796 Free PMC article.
A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut.
Fogarty EC, Schechter MS, Lolans K, Sheahan ML, Veseli I, Moore R, Kiefl E, Moody T, Rice PA, Yu MK, Mimee M, Chang EB, Mclellan SL, Willis AD, Comstock LE, Eren AM. Fogarty EC, et al. bioRxiv [Preprint]. 2023 Mar 25:2023.03.25.534219. doi: 10.1101/2023.03.25.534219. bioRxiv. 2023. PMID: 36993556 Free PMC article. Updated. Preprint.
Metabolic independence drives gut microbial colonization and resilience in health and disease.
Watson AR, Füssel J, Veseli I, DeLongchamp JZ, Silva M, Trigodet F, Lolans K, Shaiber A, Fogarty E, Runde JM, Quince C, Yu MK, Söylev A, Morrison HG, Lee STM, Kao D, Rubin DT, Jabri B, Louie T, Eren AM. Watson AR, et al. Genome Biol. 2023 Apr 17;24(1):78. doi: 10.1186/s13059-023-02924-x. Genome Biol. 2023. PMID: 37069665 Free PMC article.
14 results