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RNA structure prediction: from 2D to 3D.
Thiel BC, Flamm C, Hofacker IL. Thiel BC, et al. Among authors: flamm c. Emerg Top Life Sci. 2017 Nov 14;1(3):275-285. doi: 10.1042/ETLS20160027. Emerg Top Life Sci. 2017. PMID: 33525808
Memory-efficient RNA energy landscape exploration.
Mann M, Kucharík M, Flamm C, Wolfinger MT. Mann M, et al. Among authors: flamm c. Bioinformatics. 2014 Sep 15;30(18):2584-91. doi: 10.1093/bioinformatics/btu337. Epub 2014 May 14. Bioinformatics. 2014. PMID: 24833804 Free PMC article.
Thermodynamic and kinetic folding of riboswitches.
Badelt S, Hammer S, Flamm C, Hofacker IL. Badelt S, et al. Among authors: flamm c. Methods Enzymol. 2015;553:193-213. doi: 10.1016/bs.mie.2014.10.060. Epub 2015 Feb 12. Methods Enzymol. 2015. PMID: 25726466
RNAblueprint: flexible multiple target nucleic acid sequence design.
Hammer S, Tschiatschek B, Flamm C, Hofacker IL, Findeiß S. Hammer S, et al. Among authors: flamm c. Bioinformatics. 2017 Sep 15;33(18):2850-2858. doi: 10.1093/bioinformatics/btx263. Bioinformatics. 2017. PMID: 28449031 Free PMC article.
In silico design of ligand triggered RNA switches.
Findeiß S, Hammer S, Wolfinger MT, Kühnl F, Flamm C, Hofacker IL. Findeiß S, et al. Among authors: flamm c. Methods. 2018 Jul 1;143:90-101. doi: 10.1016/j.ymeth.2018.04.003. Epub 2018 Apr 13. Methods. 2018. PMID: 29660485
BarMap: RNA folding on dynamic energy landscapes.
Hofacker IL, Flamm C, Heine C, Wolfinger MT, Scheuermann G, Stadler PF. Hofacker IL, et al. Among authors: flamm c. RNA. 2010 Jul;16(7):1308-16. doi: 10.1261/rna.2093310. Epub 2010 May 26. RNA. 2010. PMID: 20504954 Free PMC article.
91 results