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Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.
Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, Katsantoni M, Marini F, McDonnel E, Nicolet B, Poon CL, Rot G, Schärfen L, Wu PJ, Yoon Y, Barash Y, Zavolan M. Bryce-Smith S, et al. Among authors: fitzsimmons cm. RNA. 2023 Dec;29(12):1839-1855. doi: 10.1261/rna.079849.123. Epub 2023 Oct 10. RNA. 2023. PMID: 37816550 Free PMC article. Review.
Cryptic splice mutation in the fumarate hydratase gene in patients with clinical manifestations of Hereditary Leiomyomatosis and Renal Cell Cancer.
Crooks DR, Cawthon GM, Fitzsimmons CM, Perez M, Ricketts CJ, Vocke CD, Yang Y, Middelton L, Nielsen D, Schmidt LS, Tandon M, Merino MJ, Ball MW, Meier JL, Batista PJ, Linehan WM. Crooks DR, et al. Among authors: fitzsimmons cm. Hum Mol Genet. 2023 Nov 3;32(22):3135-3145. doi: 10.1093/hmg/ddad131. Hum Mol Genet. 2023. PMID: 37561409
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data.
Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, Katsantoni M, Marini F, McDonnel E, Nicolet B, Poon CL, Rot G, Schärfen L, Wu PJ, Yoon Y, Barash Y, Zavolan M. Bryce-Smith S, et al. Among authors: fitzsimmons cm. bioRxiv [Preprint]. 2023 Jun 26:2023.06.23.546284. doi: 10.1101/2023.06.23.546284. bioRxiv. 2023. PMID: 37425672 Free PMC article. Updated. Preprint.
The modification landscape of P. aeruginosa tRNAs.
Mandler MD, Maligireddy SS, Guiblet WM, Fitzsimmons CM, McDonald KS, Warrell DL, Batista PJ. Mandler MD, et al. Among authors: fitzsimmons cm. RNA. 2024 Apr 29:rna.080004.124. doi: 10.1261/rna.080004.124. Online ahead of print. RNA. 2024. PMID: 38684317
Ten simple rules for acing virtual interviews.
Chan D, Fitzsimmons CM, Mandler MD, Batista PJ. Chan D, et al. Among authors: fitzsimmons cm. PLoS Comput Biol. 2021 Jun 24;17(6):e1009057. doi: 10.1371/journal.pcbi.1009057. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34166364 Free PMC article. No abstract available.
The thiol methyltransferase activity of TMT1A (METTL7A) is conserved across species.
González Dalmasy JM, Fitzsimmons CM, Frye WJE, Perciaccante AJ, Jewell CP, Jenkins LM, Batista PJ, Robey RW, Gottesman MM. González Dalmasy JM, et al. Among authors: fitzsimmons cm. bioRxiv [Preprint]. 2023 Nov 17:2023.11.17.567538. doi: 10.1101/2023.11.17.567538. bioRxiv. 2023. PMID: 38076968 Free PMC article. Updated. Preprint.
The thiol methyltransferase activity of TMT1A (METTL7A) is conserved across species.
González Dalmasy JM, Fitzsimmons CM, Frye WJE, Perciaccante AJ, Jewell CP, Jenkins LM, Batista PJ, Robey RW, Gottesman MM. González Dalmasy JM, et al. Among authors: fitzsimmons cm. Chem Biol Interact. 2024 May 1;394:110989. doi: 10.1016/j.cbi.2024.110989. Epub 2024 Apr 3. Chem Biol Interact. 2024. PMID: 38574836
Controlling CRISPR-Cas9 with ligand-activated and ligand-deactivated sgRNAs.
Kundert K, Lucas JE, Watters KE, Fellmann C, Ng AH, Heineike BM, Fitzsimmons CM, Oakes BL, Qu J, Prasad N, Rosenberg OS, Savage DF, El-Samad H, Doudna JA, Kortemme T. Kundert K, et al. Among authors: fitzsimmons cm. Nat Commun. 2019 May 9;10(1):2127. doi: 10.1038/s41467-019-09985-2. Nat Commun. 2019. PMID: 31073154 Free PMC article.
43 results