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In silico design of ligand triggered RNA switches.
Findeiß S, Hammer S, Wolfinger MT, Kühnl F, Flamm C, Hofacker IL. Findeiß S, et al. Methods. 2018 Jul 1;143:90-101. doi: 10.1016/j.ymeth.2018.04.003. Epub 2018 Apr 13. Methods. 2018. PMID: 29660485
RNAz 2.0: improved noncoding RNA detection.
Gruber AR, Findeiß S, Washietl S, Hofacker IL, Stadler PF. Gruber AR, et al. Among authors: findeiss s. Pac Symp Biocomput. 2010:69-79. Pac Symp Biocomput. 2010. PMID: 19908359 Free article.
TSSAR: TSS annotation regime for dRNA-seq data.
Amman F, Wolfinger MT, Lorenz R, Hofacker IL, Stadler PF, Findeiß S. Amman F, et al. Among authors: findeiss s. BMC Bioinformatics. 2014 Mar 27;15:89. doi: 10.1186/1471-2105-15-89. BMC Bioinformatics. 2014. PMID: 24674136 Free PMC article.
Design of transcription regulating riboswitches.
Findeiß S, Wachsmuth M, Mörl M, Stadler PF. Findeiß S, et al. Methods Enzymol. 2015;550:1-22. doi: 10.1016/bs.mie.2014.10.029. Epub 2014 Dec 26. Methods Enzymol. 2015. PMID: 25605378
Design criteria for synthetic riboswitches acting on transcription.
Wachsmuth M, Domin G, Lorenz R, Serfling R, Findeiß S, Stadler PF, Mörl M. Wachsmuth M, et al. Among authors: findeiss s. RNA Biol. 2015;12(2):221-31. doi: 10.1080/15476286.2015.1017235. RNA Biol. 2015. PMID: 25826571 Free PMC article.
RNAblueprint: flexible multiple target nucleic acid sequence design.
Hammer S, Tschiatschek B, Flamm C, Hofacker IL, Findeiß S. Hammer S, et al. Among authors: findeiss s. Bioinformatics. 2017 Sep 15;33(18):2850-2858. doi: 10.1093/bioinformatics/btx263. Bioinformatics. 2017. PMID: 28449031 Free PMC article.
34 results