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FUNGI: FUsioN Gene Integration toolset.
Cervera A, Rausio H, Kähkönen T, Andersson N, Partel G, Rantanen V, Paciello G, Ficarra E, Hynninen J, Hietanen S, Carpén O, Lehtonen R, Hautaniemi S, Huhtinen K. Cervera A, et al. Among authors: ficarra e. Bioinformatics. 2021 Oct 11;37(19):3353-3355. doi: 10.1093/bioinformatics/btab206. Bioinformatics. 2021. PMID: 33772596 Free PMC article.
VDJSeq-Solver: in silico V(D)J recombination detection tool.
Paciello G, Acquaviva A, Pighi C, Ferrarini A, Macii E, Zamo' A, Ficarra E. Paciello G, et al. Among authors: ficarra e. PLoS One. 2015 Mar 23;10(3):e0118192. doi: 10.1371/journal.pone.0118192. eCollection 2015. PLoS One. 2015. PMID: 25799103 Free PMC article.
A molecular dynamics study of a miRNA:mRNA interaction.
Paciello G, Acquaviva A, Ficarra E, Deriu MA, Macii E. Paciello G, et al. Among authors: ficarra e. J Mol Model. 2011 Nov;17(11):2895-906. doi: 10.1007/s00894-011-0991-x. Epub 2011 Feb 12. J Mol Model. 2011. PMID: 21318233
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: ficarra e. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
60 results