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Prevalence of persistent SARS-CoV-2 in a large community surveillance study.
Ghafari M, Hall M, Golubchik T, Ayoubkhani D, House T, MacIntyre-Cockett G, Fryer HR, Thomson L, Nurtay A, Kemp SA, Ferretti L, Buck D, Green A, Trebes A, Piazza P, Lonie LJ, Studley R, Rourke E, Smith DL, Bashton M, Nelson A, Crown M, McCann C, Young GR, Santos RAND, Richards Z, Tariq MA, Cahuantzi R; Wellcome Sanger Institute COVID-19 Surveillance Team; COVID-19 Infection Survey Group; COVID-19 Genomics UK (COG-UK) Consortium; Barrett J, Fraser C, Bonsall D, Walker AS, Lythgoe K. Ghafari M, et al. Among authors: ferretti l. Nature. 2024 Feb;626(8001):1094-1101. doi: 10.1038/s41586-024-07029-4. Epub 2024 Feb 21. Nature. 2024. PMID: 38383783 Free PMC article.
SARS-CoV-2 within-host diversity and transmission.
Lythgoe KA, Hall M, Ferretti L, de Cesare M, MacIntyre-Cockett G, Trebes A, Andersson M, Otecko N, Wise EL, Moore N, Lynch J, Kidd S, Cortes N, Mori M, Williams R, Vernet G, Justice A, Green A, Nicholls SM, Ansari MA, Abeler-Dörner L, Moore CE, Peto TEA, Eyre DW, Shaw R, Simmonds P, Buck D, Todd JA; Oxford Virus Sequencing Analysis Group (OVSG); Connor TR, Ashraf S, da Silva Filipe A, Shepherd J, Thomson EC; COVID-19 Genomics UK (COG-UK) Consortium; Bonsall D, Fraser C, Golubchik T. Lythgoe KA, et al. Among authors: ferretti l. Science. 2021 Apr 16;372(6539):eabg0821. doi: 10.1126/science.abg0821. Epub 2021 Mar 9. Science. 2021. PMID: 33688063 Free PMC article.
The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA.
Zhao L, Hall M, de Cesare M, MacIntyre-Cockett G, Lythgoe K, Fraser C, Bonsall D, Golubchik T; COVID-19 Genomics UK (COG-UK) Consortium; Ferretti L. Zhao L, et al. Among authors: ferretti l. Proc Biol Sci. 2022 Nov 30;289(1987):20221747. doi: 10.1098/rspb.2022.1747. Epub 2022 Nov 16. Proc Biol Sci. 2022. PMID: 36382519 Free PMC article.
Time to evaluate COVID-19 contact-tracing apps.
Colizza V, Grill E, Mikolajczyk R, Cattuto C, Kucharski A, Riley S, Kendall M, Lythgoe K, Bonsall D, Wymant C, Abeler-Dörner L, Ferretti L, Fraser C. Colizza V, et al. Among authors: ferretti l. Nat Med. 2021 Mar;27(3):361-362. doi: 10.1038/s41591-021-01236-6. Nat Med. 2021. PMID: 33589822 No abstract available.
Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models.
Hinch R, Panovska-Griffiths J, Probert WJM, Ferretti L, Wymant C, Di Lauro F, Baya N, Ghafari M, Abeler-Dörner L; COVID-19 Genomics UK (COG-UK) Consortium; Fraser C. Hinch R, et al. Among authors: ferretti l. Philos Trans A Math Phys Eng Sci. 2022 Oct 3;380(2233):20210304. doi: 10.1098/rsta.2021.0304. Epub 2022 Aug 15. Philos Trans A Math Phys Eng Sci. 2022. PMID: 35965459 Free PMC article.
The epidemiological impact of the NHS COVID-19 app.
Wymant C, Ferretti L, Tsallis D, Charalambides M, Abeler-Dörner L, Bonsall D, Hinch R, Kendall M, Milsom L, Ayres M, Holmes C, Briers M, Fraser C. Wymant C, et al. Among authors: ferretti l. Nature. 2021 Jun;594(7863):408-412. doi: 10.1038/s41586-021-03606-z. Epub 2021 May 12. Nature. 2021. PMID: 33979832
Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts.
Ferretti L, Wymant C, Petrie J, Tsallis D, Kendall M, Ledda A, Di Lauro F, Fowler A, Di Francia A, Panovska-Griffiths J, Abeler-Dörner L, Charalambides M, Briers M, Fraser C. Ferretti L, et al. Nature. 2024 Feb;626(7997):145-150. doi: 10.1038/s41586-023-06952-2. Epub 2023 Dec 20. Nature. 2024. PMID: 38122820 Free PMC article.
OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing.
Hinch R, Probert WJM, Nurtay A, Kendall M, Wymant C, Hall M, Lythgoe K, Bulas Cruz A, Zhao L, Stewart A, Ferretti L, Montero D, Warren J, Mather N, Abueg M, Wu N, Legat O, Bentley K, Mead T, Van-Vuuren K, Feldner-Busztin D, Ristori T, Finkelstein A, Bonsall DG, Abeler-Dörner L, Fraser C. Hinch R, et al. Among authors: ferretti l. PLoS Comput Biol. 2021 Jul 12;17(7):e1009146. doi: 10.1371/journal.pcbi.1009146. eCollection 2021 Jul. PLoS Comput Biol. 2021. PMID: 34252083 Free PMC article.
265 results