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Why assembling plant genome sequences is so challenging.
Claros MG, Bautista R, Guerrero-Fernández D, Benzerki H, Seoane P, Fernández-Pozo N. Claros MG, et al. Biology (Basel). 2012 Sep 18;1(2):439-59. doi: 10.3390/biology1020439. Biology (Basel). 2012. PMID: 24832233 Free PMC article.
De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.
Canales J, Bautista R, Label P, Gómez-Maldonado J, Lesur I, Fernández-Pozo N, Rueda-López M, Guerrero-Fernández D, Castro-Rodríguez V, Benzekri H, Cañas RA, Guevara MA, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, Noirot C, Klopp C, Reymond I, García-Gutiérrez A, Trontin JF, Lelu-Walter MA, Miguel C, Cervera MT, Cantón FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, Cánovas FM. Canales J, et al. Plant Biotechnol J. 2014 Apr;12(3):286-99. doi: 10.1111/pbi.12136. Epub 2013 Nov 21. Plant Biotechnol J. 2014. PMID: 24256179 Free article.
EuroPineDB: a high-coverage web database for maritime pine transcriptome.
Fernández-Pozo N, Canales J, Guerrero-Fernández D, Villalobos DP, Díaz-Moreno SM, Bautista R, Flores-Monterroso A, Guevara MÁ, Perdiguero P, Collada C, Cervera MT, Soto A, Ordás R, Cantón FR, Avila C, Cánovas FM, Claros MG. Fernández-Pozo N, et al. BMC Genomics. 2011 Jul 15;12:366. doi: 10.1186/1471-2164-12-366. BMC Genomics. 2011. PMID: 21762488 Free PMC article.
De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray.
Benzekri H, Armesto P, Cousin X, Rovira M, Crespo D, Merlo MA, Mazurais D, Bautista R, Guerrero-Fernández D, Fernandez-Pozo N, Ponce M, Infante C, Zambonino JL, Nidelet S, Gut M, Rebordinos L, Planas JV, Bégout ML, Claros MG, Manchado M. Benzekri H, et al. BMC Genomics. 2014 Nov 3;15(1):952. doi: 10.1186/1471-2164-15-952. BMC Genomics. 2014. PMID: 25366320 Free PMC article.
PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.
Fernandez-Pozo N, Haas FB, Meyberg R, Ullrich KK, Hiss M, Perroud PF, Hanke S, Kratz V, Powell AF, Vesty EF, Daum CG, Zane M, Lipzen A, Sreedasyam A, Grimwood J, Coates JC, Barry K, Schmutz J, Mueller LA, Rensing SA. Fernandez-Pozo N, et al. Plant J. 2020 Apr;102(1):165-177. doi: 10.1111/tpj.14607. Epub 2020 Jan 11. Plant J. 2020. PMID: 31714620 Free article.
Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds.
Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA. Wilhelmsson PKI, et al. BMC Genomics. 2019 Jan 30;20(1):95. doi: 10.1186/s12864-019-5452-4. BMC Genomics. 2019. PMID: 30700268 Free PMC article.
46 results