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Page 1
Cryo-EM and Single-Particle Analysis with Scipion.
Jiménez-Moreno A, Del Caño L, Martínez M, Ramírez-Aportela E, Cuervo A, Melero R, Sánchez-García R, Strelak D, Fernández-Giménez E, de Isidro-Gómez FP, Herreros D, Conesa P, Fonseca Y, Maluenda D, Jiménez de la Morena J, Macías JR, Losana P, Marabini R, Carazo JM, Sorzano COS. Jiménez-Moreno A, et al. Among authors: fernandez gimenez e. J Vis Exp. 2021 May 29;(171). doi: 10.3791/62261. J Vis Exp. 2021. PMID: 34125107
Blind estimation of DED camera gain in Electron Microscopy.
Sorzano COS, Fernández-Giménez E, Peredo-Robinson V, Vargas J, Majtner T, Caffarena G, Otón J, Vilas JL, de la Rosa-Trevín JM, Melero R, Gómez-Blanco J, Cuenca J, Del Cano L, Conesa P, Marabini R, Carazo JM. Sorzano COS, et al. J Struct Biol. 2018 Aug;203(2):90-93. doi: 10.1016/j.jsb.2018.03.007. Epub 2018 Mar 15. J Struct Biol. 2018. PMID: 29551714
Integration of Cryo-EM Model Building Software in Scipion.
Martínez M, Jiménez-Moreno A, Maluenda D, Ramírez-Aportela E, Melero R, Cuervo A, Conesa P, Del Caño L, Fonseca YC, Sánchez-García R, Strelak D, Conesa JJ, Fernández-Giménez E, de Isidro F, Sorzano COS, Carazo JM, Marabini R. Martínez M, et al. J Chem Inf Model. 2020 May 26;60(5):2533-2540. doi: 10.1021/acs.jcim.9b01032. Epub 2020 Feb 11. J Chem Inf Model. 2020. PMID: 31994878 Free article.
Improvements on marker-free images alignment for electron tomography.
Sorzano COS, de Isidro-Gómez F, Fernández-Giménez E, Herreros D, Marco S, Carazo JM, Messaoudi C. Sorzano COS, et al. J Struct Biol X. 2020 Sep 17;4:100037. doi: 10.1016/j.yjsbx.2020.100037. eCollection 2020. J Struct Biol X. 2020. PMID: 33024955 Free PMC article.
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM.
Sorzano COS, Semchonok D, Lin SC, Lo YC, Vilas JL, Jiménez-Moreno A, Gragera M, Vacca S, Maluenda D, Martínez M, Ramírez-Aportela E, Melero R, Cuervo A, Conesa JJ, Conesa P, Losana P, Caño LD, de la Morena JJ, Fonseca YC, Sánchez-García R, Strelak D, Fernández-Giménez E, de Isidro F, Herreros D, Kastritis PL, Marabini R, Bruce BD, Carazo JM. Sorzano COS, et al. J Struct Biol. 2021 Mar;213(1):107695. doi: 10.1016/j.jsb.2020.107695. Epub 2021 Jan 7. J Struct Biol. 2021. PMID: 33421545 Free article.
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods.
Sorzano COS, Jiménez-Moreno A, Maluenda D, Ramírez-Aportela E, Martínez M, Cuervo A, Melero R, Conesa JJ, Sánchez-García R, Strelak D, Filipovic J, Fernández-Giménez E, de Isidro-Gómez F, Herreros D, Conesa P, Del Caño L, Fonseca Y, de la Morena JJ, Macías JR, Losana P, Marabini R, Carazo JM. Sorzano COS, et al. Methods Mol Biol. 2021;2305:257-289. doi: 10.1007/978-1-0716-1406-8_13. Methods Mol Biol. 2021. PMID: 33950394
Cryo-EM density maps adjustment for subtraction, consensus and sharpening.
Fernández-Giménez E, Martínez M, Sánchez-García R, Marabini R, Ramírez-Aportela E, Conesa P, Carazo JM, Sorzano COS. Fernández-Giménez E, et al. J Struct Biol. 2021 Dec;213(4):107780. doi: 10.1016/j.jsb.2021.107780. Epub 2021 Aug 29. J Struct Biol. 2021. PMID: 34469787 Free article.
Structural analysis of receptors and actin polarity in platelet protrusions.
Sorrentino S, Conesa JJ, Cuervo A, Melero R, Martins B, Fernandez-Gimenez E, de Isidro-Gomez FP, de la Morena J, Studt JD, Sorzano COS, Eibauer M, Carazo JM, Medalia O. Sorrentino S, et al. Among authors: fernandez gimenez e. Proc Natl Acad Sci U S A. 2021 Sep 14;118(37):e2105004118. doi: 10.1073/pnas.2105004118. Proc Natl Acad Sci U S A. 2021. PMID: 34504018 Free PMC article.
Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion.
Strelak D, Jiménez-Moreno A, Vilas JL, Ramírez-Aportela E, Sánchez-García R, Maluenda D, Vargas J, Herreros D, Fernández-Giménez E, de Isidro-Gómez FP, Horacek J, Myska D, Horacek M, Conesa P, Fonseca-Reyna YC, Jiménez J, Martínez M, Harastani M, Jonić S, Filipovic J, Marabini R, Carazo JM, Sorzano COS. Strelak D, et al. Among authors: fernandez gimenez e. Molecules. 2021 Oct 15;26(20):6224. doi: 10.3390/molecules26206224. Molecules. 2021. PMID: 34684805 Free PMC article.
On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy.
Sorzano COS, Jiménez-Moreno A, Maluenda D, Martínez M, Ramírez-Aportela E, Krieger J, Melero R, Cuervo A, Conesa J, Filipovic J, Conesa P, Del Caño L, Fonseca YC, Jiménez-de la Morena J, Losana P, Sánchez-García R, Strelak D, Fernández-Giménez E, de Isidro-Gómez FP, Herreros D, Vilas JL, Marabini R, Carazo JM. Sorzano COS, et al. Among authors: fernandez gimenez e. Acta Crystallogr D Struct Biol. 2022 Apr 1;78(Pt 4):410-423. doi: 10.1107/S2059798322001978. Epub 2022 Mar 16. Acta Crystallogr D Struct Biol. 2022. PMID: 35362465 Free PMC article.
16 results