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Bowhead: Bayesian modelling of cell velocity during concerted cell migration.
Engel M, Longden J, Ferkinghoff-Borg J, Robin X, Saginc G, Linding R. Engel M, et al. Among authors: ferkinghoff borg j. PLoS Comput Biol. 2018 Jan 8;14(1):e1005900. doi: 10.1371/journal.pcbi.1005900. eCollection 2018 Jan. PLoS Comput Biol. 2018. PMID: 29309407 Free PMC article.
Kinome-wide decoding of network-attacking mutations rewiring cancer signaling.
Creixell P, Schoof EM, Simpson CD, Longden J, Miller CJ, Lou HJ, Perryman L, Cox TR, Zivanovic N, Palmeri A, Wesolowska-Andersen A, Helmer-Citterich M, Ferkinghoff-Borg J, Itamochi H, Bodenmiller B, Erler JT, Turk BE, Linding R. Creixell P, et al. Among authors: ferkinghoff borg j. Cell. 2015 Sep 24;163(1):202-17. doi: 10.1016/j.cell.2015.08.056. Epub 2015 Sep 17. Cell. 2015. PMID: 26388441 Free PMC article.
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure.
Boomsma W, Frellsen J, Harder T, Bottaro S, Johansson KE, Tian P, Stovgaard K, Andreetta C, Olsson S, Valentin JB, Antonov LD, Christensen AS, Borg M, Jensen JH, Lindorff-Larsen K, Ferkinghoff-Borg J, Hamelryck T. Boomsma W, et al. J Comput Chem. 2013 Jul 15;34(19):1697-705. doi: 10.1002/jcc.23292. Epub 2013 Apr 26. J Comput Chem. 2013. PMID: 23619610
A probabilistic model of RNA conformational space.
Frellsen J, Moltke I, Thiim M, Mardia KV, Ferkinghoff-Borg J, Hamelryck T. Frellsen J, et al. PLoS Comput Biol. 2009 Jun;5(6):e1000406. doi: 10.1371/journal.pcbi.1000406. Epub 2009 Jun 19. PLoS Comput Biol. 2009. PMID: 19543381 Free PMC article.
Computational Redesign of Thioredoxin Is Hypersensitive toward Minor Conformational Changes in the Backbone Template.
Johansson KE, Tidemand Johansen N, Christensen S, Horowitz S, Bardwell JCA, Olsen JG, Willemoës M, Lindorff-Larsen K, Ferkinghoff-Borg J, Hamelryck T, Winther JR. Johansson KE, et al. Among authors: ferkinghoff borg j. J Mol Biol. 2016 Oct 23;428(21):4361-4377. doi: 10.1016/j.jmb.2016.09.013. Epub 2016 Sep 20. J Mol Biol. 2016. PMID: 27659562 Free PMC article.
42 results