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BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.
Hardisty AR, Bacall F, Beard N, Balcázar-Vargas MP, Balech B, Barcza Z, Bourlat SJ, De Giovanni R, de Jong Y, De Leo F, Dobor L, Donvito G, Fellows D, Guerra AF, Ferreira N, Fetyukova Y, Fosso B, Giddy J, Goble C, Güntsch A, Haines R, Ernst VH, Hettling H, Hidy D, Horváth F, Ittzés D, Ittzés P, Jones A, Kottmann R, Kulawik R, Leidenberger S, Lyytikäinen-Saarenmaa P, Mathew C, Morrison N, Nenadic A, de la Hidalga AN, Obst M, Oostermeijer G, Paymal E, Pesole G, Pinto S, Poigné A, Fernandez FQ, Santamaria M, Saarenmaa H, Sipos G, Sylla KH, Tähtinen M, Vicario S, Vos RA, Williams AR, Yilmaz P. Hardisty AR, et al. Among authors: fellows d. BMC Ecol. 2016 Oct 20;16(1):49. doi: 10.1186/s12898-016-0103-y. BMC Ecol. 2016. PMID: 27765035 Free PMC article.
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C. Wolstencroft K, et al. Among authors: fellows d. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W557-61. doi: 10.1093/nar/gkt328. Epub 2013 May 2. Nucleic Acids Res. 2013. PMID: 23640334 Free PMC article.
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
McMurry JA, Juty N, Blomberg N, Burdett T, Conlin T, Conte N, Courtot M, Deck J, Dumontier M, Fellows DK, Gonzalez-Beltran A, Gormanns P, Grethe J, Hastings J, Hériché JK, Hermjakob H, Ison JC, Jimenez RC, Jupp S, Kunze J, Laibe C, Le Novère N, Malone J, Martin MJ, McEntyre JR, Morris C, Muilu J, Müller W, Rocca-Serra P, Sansone SA, Sariyar M, Snoep JL, Soiland-Reyes S, Stanford NJ, Swainston N, Washington N, Williams AR, Wimalaratne SM, Winfree LM, Wolstencroft K, Goble C, Mungall CJ, Haendel MA, Parkinson H. McMurry JA, et al. Among authors: fellows dk. PLoS Biol. 2017 Jun 29;15(6):e2001414. doi: 10.1371/journal.pbio.2001414. eCollection 2017 Jun. PLoS Biol. 2017. PMID: 28662064 Free PMC article.
SYNBIOCHEM-a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals.
Carbonell P, Currin A, Dunstan M, Fellows D, Jervis A, Rattray NJ, Robinson CJ, Swainston N, Vinaixa M, Williams A, Yan C, Barran P, Breitling R, Chen GG, Faulon JL, Goble C, Goodacre R, Kell DB, Feuvre RL, Micklefield J, Scrutton NS, Shapira P, Takano E, Turner NJ. Carbonell P, et al. Among authors: fellows d. Biochem Soc Trans. 2016 Jun 15;44(3):675-7. doi: 10.1042/BST20160009. Biochem Soc Trans. 2016. PMID: 27284023 Free PMC article.
An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals.
Carbonell P, Jervis AJ, Robinson CJ, Yan C, Dunstan M, Swainston N, Vinaixa M, Hollywood KA, Currin A, Rattray NJW, Taylor S, Spiess R, Sung R, Williams AR, Fellows D, Stanford NJ, Mulherin P, Le Feuvre R, Barran P, Goodacre R, Turner NJ, Goble C, Chen GG, Kell DB, Micklefield J, Breitling R, Takano E, Faulon JL, Scrutton NS. Carbonell P, et al. Among authors: fellows d. Commun Biol. 2018 Jun 8;1:66. doi: 10.1038/s42003-018-0076-9. eCollection 2018. Commun Biol. 2018. PMID: 30271948 Free PMC article.
SpiNNTools: The Execution Engine for the SpiNNaker Platform.
Rowley AGD, Brenninkmeijer C, Davidson S, Fellows D, Gait A, Lester DR, Plana LA, Rhodes O, Stokes AB, Furber SB. Rowley AGD, et al. Among authors: fellows d. Front Neurosci. 2019 Mar 26;13:231. doi: 10.3389/fnins.2019.00231. eCollection 2019. Front Neurosci. 2019. PMID: 30971873 Free PMC article.
sPyNNaker: A Software Package for Running PyNN Simulations on SpiNNaker.
Rhodes O, Bogdan PA, Brenninkmeijer C, Davidson S, Fellows D, Gait A, Lester DR, Mikaitis M, Plana LA, Rowley AGD, Stokes AB, Furber SB. Rhodes O, et al. Among authors: fellows d. Front Neurosci. 2018 Nov 20;12:816. doi: 10.3389/fnins.2018.00816. eCollection 2018. Front Neurosci. 2018. PMID: 30524220 Free PMC article.
Four consecutive yearly point-prevalence studies in Wales indicate lack of improvement in sepsis care on the wards.
Kopczynska M, Unwin H, Pugh RJ, Sharif B, Chandy T, Davies DJ, Shield ME, Purchase DE, Tilley SC, Poacher A, Oliva L, Willis S, Ray IE, Hui JNC, Payne BC, Wardle EF, Andrew F, Chan HMP, Barrington J, Hale J, Hawkins J, Nicholas JK, Wirt LE, Thomas LH, Walker M, Pan MP, Ray T, Asim UH, Maidman V, Atiyah Z, Nasser ZM, Tan ZX, Tan LJP, Szakmany T; Welsh Digital Data Collection Platform collaborators. Kopczynska M, et al. Sci Rep. 2021 Aug 10;11(1):16222. doi: 10.1038/s41598-021-95648-6. Sci Rep. 2021. PMID: 34376757 Free PMC article.
46 results