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ChAMP: updated methylation analysis pipeline for Illumina BeadChips.
Tian Y, Morris TJ, Webster AP, Yang Z, Beck S, Feber A, Teschendorff AE. Tian Y, et al. Among authors: feber a. Bioinformatics. 2017 Dec 15;33(24):3982-3984. doi: 10.1093/bioinformatics/btx513. Bioinformatics. 2017. PMID: 28961746 Free PMC article.
Many enhanced functionalities have been added, including correction for cell-type heterogeneity, network analysis and a series of interactive graphical user interfaces. AVAILABILITY AND IMPLEMENTATION: ChAMP is a BioC package available from https://bioconductor.org/ …
Many enhanced functionalities have been added, including correction for cell-type heterogeneity, network analysis and a series of int …
A functional methylome map of ulcerative colitis.
Häsler R, Feng Z, Bäckdahl L, Spehlmann ME, Franke A, Teschendorff A, Rakyan VK, Down TA, Wilson GA, Feber A, Beck S, Schreiber S, Rosenstiel P. Häsler R, et al. Among authors: feber a. Genome Res. 2012 Nov;22(11):2130-7. doi: 10.1101/gr.138347.112. Epub 2012 Jul 23. Genome Res. 2012. PMID: 22826509 Free PMC article.
Identification and functional validation of HPV-mediated hypermethylation in head and neck squamous cell carcinoma.
Lechner M, Fenton T, West J, Wilson G, Feber A, Henderson S, Thirlwell C, Dibra HK, Jay A, Butcher L, Chakravarthy AR, Gratrix F, Patel N, Vaz F, O'Flynn P, Kalavrezos N, Teschendorff AE, Boshoff C, Beck S. Lechner M, et al. Among authors: feber a. Genome Med. 2013 Feb 5;5(2):15. doi: 10.1186/gm419. eCollection 2013. Genome Med. 2013. PMID: 23419152 Free PMC article.
Targeted next-generation sequencing of head and neck squamous cell carcinoma identifies novel genetic alterations in HPV+ and HPV- tumors.
Lechner M, Frampton GM, Fenton T, Feber A, Palmer G, Jay A, Pillay N, Forster M, Cronin MT, Lipson D, Miller VA, Brennan TA, Henderson S, Vaz F, O'Flynn P, Kalavrezos N, Yelensky R, Beck S, Stephens PJ, Boshoff C. Lechner M, et al. Among authors: feber a. Genome Med. 2013 May 29;5(5):49. doi: 10.1186/gm453. eCollection 2013. Genome Med. 2013. PMID: 23718828 Free PMC article.
Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2.
Guilhamon P, Eskandarpour M, Halai D, Wilson GA, Feber A, Teschendorff AE, Gomez V, Hergovich A, Tirabosco R, Fernanda Amary M, Baumhoer D, Jundt G, Ross MT, Flanagan AM, Beck S. Guilhamon P, et al. Among authors: feber a. Nat Commun. 2013;4:2166. doi: 10.1038/ncomms3166. Nat Commun. 2013. PMID: 23863747 Free PMC article.
77 results