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No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing.
Smits N, Rasmussen J, Bodea GO, Amarilla AA, Gerdes P, Sanchez-Luque FJ, Ajjikuttira P, Modhiran N, Liang B, Faivre J, Deveson IW, Khromykh AA, Watterson D, Ewing AD, Faulkner GJ. Smits N, et al. Among authors: faulkner gj. Cell Rep. 2021 Aug 17;36(7):109530. doi: 10.1016/j.celrep.2021.109530. Epub 2021 Jul 28. Cell Rep. 2021. PMID: 34380018 Free PMC article.
Extensive somatic L1 retrotransposition in colorectal tumors.
Solyom S, Ewing AD, Rahrmann EP, Doucet T, Nelson HH, Burns MB, Harris RS, Sigmon DF, Casella A, Erlanger B, Wheelan S, Upton KR, Shukla R, Faulkner GJ, Largaespada DA, Kazazian HH Jr. Solyom S, et al. Among authors: faulkner gj. Genome Res. 2012 Dec;22(12):2328-38. doi: 10.1101/gr.145235.112. Epub 2012 Sep 11. Genome Res. 2012. PMID: 22968929 Free PMC article.
Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma.
Shukla R, Upton KR, Muñoz-Lopez M, Gerhardt DJ, Fisher ME, Nguyen T, Brennan PM, Baillie JK, Collino A, Ghisletti S, Sinha S, Iannelli F, Radaelli E, Dos Santos A, Rapoud D, Guettier C, Samuel D, Natoli G, Carninci P, Ciccarelli FD, Garcia-Perez JL, Faivre J, Faulkner GJ. Shukla R, et al. Among authors: faulkner gj. Cell. 2013 Mar 28;153(1):101-11. doi: 10.1016/j.cell.2013.02.032. Cell. 2013. PMID: 23540693 Free PMC article.
Ubiquitous L1 mosaicism in hippocampal neurons.
Upton KR, Gerhardt DJ, Jesuadian JS, Richardson SR, Sánchez-Luque FJ, Bodea GO, Ewing AD, Salvador-Palomeque C, van der Knaap MS, Brennan PM, Vanderver A, Faulkner GJ. Upton KR, et al. Among authors: faulkner gj. Cell. 2015 Apr 9;161(2):228-39. doi: 10.1016/j.cell.2015.03.026. Cell. 2015. PMID: 25860606 Free PMC article.
Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells.
Klawitter S, Fuchs NV, Upton KR, Muñoz-Lopez M, Shukla R, Wang J, Garcia-Cañadas M, Lopez-Ruiz C, Gerhardt DJ, Sebe A, Grabundzija I, Merkert S, Gerdes P, Pulgarin JA, Bock A, Held U, Witthuhn A, Haase A, Sarkadi B, Löwer J, Wolvetang EJ, Martin U, Ivics Z, Izsvák Z, Garcia-Perez JL, Faulkner GJ, Schumann GG. Klawitter S, et al. Among authors: faulkner gj. Nat Commun. 2016 Jan 8;7:10286. doi: 10.1038/ncomms10286. Nat Commun. 2016. PMID: 26743714 Free PMC article.
Heritable L1 retrotransposition in the mouse primordial germline and early embryo.
Richardson SR, Gerdes P, Gerhardt DJ, Sanchez-Luque FJ, Bodea GO, Muñoz-Lopez M, Jesuadian JS, Kempen MHC, Carreira PE, Jeddeloh JA, Garcia-Perez JL, Kazazian HH Jr, Ewing AD, Faulkner GJ. Richardson SR, et al. Among authors: faulkner gj. Genome Res. 2017 Aug;27(8):1395-1405. doi: 10.1101/gr.219022.116. Epub 2017 May 8. Genome Res. 2017. PMID: 28483779 Free PMC article.
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