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Engineering the future of 3D pathology.
Liu JT, Chow SS, Colling R, Downes MR, Farré X, Humphrey P, Janowczyk A, Mirtti T, Verrill C, Zlobec I, True LD. Liu JT, et al. Among authors: farre x. J Pathol Clin Res. 2024 Jan;10(1):e347. doi: 10.1002/cjp2.347. Epub 2023 Nov 2. J Pathol Clin Res. 2024. PMID: 37919231 Free PMC article.
Visual Assessment of 2-Dimensional Levels Within 3-Dimensional Pathology Data Sets of Prostate Needle Biopsies Reveals Substantial Spatial Heterogeneity.
Koyuncu C, Janowczyk A, Farre X, Pathak T, Mirtti T, Fernandez PL, Pons L, Reder NP, Serafin R, Chow SSL, Viswanathan VS, Glaser AK, True LD, Liu JTC, Madabhushi A. Koyuncu C, et al. Among authors: farre x. Lab Invest. 2023 Dec;103(12):100265. doi: 10.1016/j.labinv.2023.100265. Epub 2023 Oct 18. Lab Invest. 2023. PMID: 37858679 Free PMC article.
Artificial intelligence assistance significantly improves Gleason grading of prostate biopsies by pathologists.
Bulten W, Balkenhol M, Belinga JA, Brilhante A, Çakır A, Egevad L, Eklund M, Farré X, Geronatsiou K, Molinié V, Pereira G, Roy P, Saile G, Salles P, Schaafsma E, Tschui J, Vos AM; ISUP Pathology Imagebase Expert Panel; van Boven H, Vink R, van der Laak J, Hulsbergen-van der Kaa C, Litjens G. Bulten W, et al. Among authors: farre x. Mod Pathol. 2021 Mar;34(3):660-671. doi: 10.1038/s41379-020-0640-y. Epub 2020 Aug 5. Mod Pathol. 2021. PMID: 32759979 Free PMC article.
T1 and T2 MR fingerprinting measurements of prostate cancer and prostatitis correlate with deep learning-derived estimates of epithelium, lumen, and stromal composition on corresponding whole mount histopathology.
Shiradkar R, Panda A, Leo P, Janowczyk A, Farre X, Janaki N, Li L, Pahwa S, Mahran A, Buzzy C, Fu P, Elliott R, MacLennan G, Ponsky L, Gulani V, Madabhushi A. Shiradkar R, et al. Among authors: farre x. Eur Radiol. 2021 Mar;31(3):1336-1346. doi: 10.1007/s00330-020-07214-9. Epub 2020 Sep 2. Eur Radiol. 2021. PMID: 32876839 Free PMC article.
Correction to: T1 and T2 MR fingerprinting measurements of prostate cancer and prostatitis correlate with deep learning-derived estimates of epithelium, lumen, and stromal composition on corresponding whole mount histopathology.
Shiradkar R, Panda A, Leo P, Janowczyk A, Farre X, Janaki N, Li L, Pahwa S, Mahran A, Buzzy C, Fu P, Elliott R, MacLennan G, Ponsky L, Gulani V, Madabhushi A. Shiradkar R, et al. Among authors: farre x. Eur Radiol. 2021 Apr;31(4):2644. doi: 10.1007/s00330-020-07285-8. Eur Radiol. 2021. PMID: 32945970 No abstract available.
Computationally Derived Cribriform Area Index from Prostate Cancer Hematoxylin and Eosin Images Is Associated with Biochemical Recurrence Following Radical Prostatectomy and Is Most Prognostic in Gleason Grade Group 2.
Leo P, Chandramouli S, Farré X, Elliott R, Janowczyk A, Bera K, Fu P, Janaki N, El-Fahmawi A, Shahait M, Kim J, Lee D, Yamoah K, Rebbeck TR, Khani F, Robinson BD, Shih NNC, Feldman M, Gupta S, McKenney J, Lal P, Madabhushi A. Leo P, et al. Among authors: farre x. Eur Urol Focus. 2021 Jul;7(4):722-732. doi: 10.1016/j.euf.2021.04.016. Epub 2021 Apr 30. Eur Urol Focus. 2021. PMID: 33941504 Free PMC article.
Computer extracted gland features from H&E predicts prostate cancer recurrence comparably to a genomic companion diagnostic test: a large multi-site study.
Leo P, Janowczyk A, Elliott R, Janaki N, Bera K, Shiradkar R, Farré X, Fu P, El-Fahmawi A, Shahait M, Kim J, Lee D, Yamoah K, Rebbeck TR, Khani F, Robinson BD, Eklund L, Jambor I, Merisaari H, Ettala O, Taimen P, Aronen HJ, Boström PJ, Tewari A, Magi-Galluzzi C, Klein E, Purysko A, Nc Shih N, Feldman M, Gupta S, Lal P, Madabhushi A. Leo P, et al. Among authors: farre x. NPJ Precis Oncol. 2021 May 3;5(1):35. doi: 10.1038/s41698-021-00174-3. NPJ Precis Oncol. 2021. PMID: 33941830 Free PMC article.
Artificial intelligence for diagnosis and Gleason grading of prostate cancer: the PANDA challenge.
Bulten W, Kartasalo K, Chen PC, Ström P, Pinckaers H, Nagpal K, Cai Y, Steiner DF, van Boven H, Vink R, Hulsbergen-van de Kaa C, van der Laak J, Amin MB, Evans AJ, van der Kwast T, Allan R, Humphrey PA, Grönberg H, Samaratunga H, Delahunt B, Tsuzuki T, Häkkinen T, Egevad L, Demkin M, Dane S, Tan F, Valkonen M, Corrado GS, Peng L, Mermel CH, Ruusuvuori P, Litjens G, Eklund M; PANDA challenge consortium. Bulten W, et al. Nat Med. 2022 Jan;28(1):154-163. doi: 10.1038/s41591-021-01620-2. Epub 2022 Jan 13. Nat Med. 2022. PMID: 35027755 Free PMC article.
52 results