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Page 1
Ten simple rules for developing visualization tools in genomics.
Durant E, Rouard M, Ganko EW, Muller C, Cleary AM, Farmer AD, Conte M, Sabot F. Durant E, et al. Among authors: farmer ad. PLoS Comput Biol. 2022 Nov 10;18(11):e1010622. doi: 10.1371/journal.pcbi.1010622. eCollection 2022 Nov. PLoS Comput Biol. 2022. PMID: 36355753 Free PMC article. No abstract available.
The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes.
Harger C, Skupski M, Allen E, Clark C, Crowley D, Dickinson E, Easley D, Espinosa-Lujan A, Farmer A, Fields C, Flores L, Harris L, Keen G, Manning M, McLeod M, O'Neill J, Pumilia M, Reinert R, Rider D, Rohrlich J, Romero Y, Schwertfeger J, Seluja G, Siepel A, Schad PA, et al. Harger C, et al. Nucleic Acids Res. 1997 Jan 1;25(1):18-23. doi: 10.1093/nar/25.1.18. Nucleic Acids Res. 1997. PMID: 9016496 Free PMC article.
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.
Clarke JL, Cooper LD, Poelchau MF, Berardini TZ, Elser J, Farmer AD, Ficklin S, Kumari S, Laporte MA, Nelson RT, Sadohara R, Selby P, Thessen AE, Whitehead B, Sen TZ. Clarke JL, et al. Among authors: farmer ad. Database (Oxford). 2023 Nov 15;2023:baad076. doi: 10.1093/database/baad076. Database (Oxford). 2023. PMID: 37971715 Free PMC article.
Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition.
Rudd JJ, Kanyuka K, Hassani-Pak K, Derbyshire M, Andongabo A, Devonshire J, Lysenko A, Saqi M, Desai NM, Powers SJ, Hooper J, Ambroso L, Bharti A, Farmer A, Hammond-Kosack KE, Dietrich RA, Courbot M. Rudd JJ, et al. Plant Physiol. 2015 Mar;167(3):1158-85. doi: 10.1104/pp.114.255927. Epub 2015 Jan 16. Plant Physiol. 2015. PMID: 25596183 Free PMC article.
Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control.
Arango Isaza RE, Diaz-Trujillo C, Dhillon B, Aerts A, Carlier J, Crane CF, V de Jong T, de Vries I, Dietrich R, Farmer AD, Fortes Fereira C, Garcia S, Guzman M, Hamelin RC, Lindquist EA, Mehrabi R, Quiros O, Schmutz J, Shapiro H, Reynolds E, Scalliet G, Souza M Jr, Stergiopoulos I, Van der Lee TA, De Wit PJ, Zapater MF, Zwiers LH, Grigoriev IV, Goodwin SB, Kema GH. Arango Isaza RE, et al. Among authors: farmer ad. PLoS Genet. 2016 Aug 11;12(8):e1005876. doi: 10.1371/journal.pgen.1005876. eCollection 2016 Aug. PLoS Genet. 2016. PMID: 27512984 Free PMC article.
The Genome Sequence DataBase: towards an integrated functional genomics resource.
Skupski MP, Booker M, Farmer A, Harpold M, Huang W, Inman J, Kiphart D, Kodira C, Root S, Schilkey F, Schwertfeger J, Siepel A, Stamper D, Thayer N, Thompson R, Wortman J, Zhuang JJ, Harger C. Skupski MP, et al. Nucleic Acids Res. 1999 Jan 1;27(1):35-8. doi: 10.1093/nar/27.1.35. Nucleic Acids Res. 1999. PMID: 9847136 Free PMC article.
A gapless genome sequence of the fungus Botrytis cinerea.
Van Kan JA, Stassen JH, Mosbach A, Van Der Lee TA, Faino L, Farmer AD, Papasotiriou DG, Zhou S, Seidl MF, Cottam E, Edel D, Hahn M, Schwartz DC, Dietrich RA, Widdison S, Scalliet G. Van Kan JA, et al. Among authors: farmer ad. Mol Plant Pathol. 2017 Jan;18(1):75-89. doi: 10.1111/mpp.12384. Epub 2016 Jun 9. Mol Plant Pathol. 2017. PMID: 26913498 Free PMC article.
The Medicago Genome Initiative: a model legume database.
Bell CJ, Dixon RA, Farmer AD, Flores R, Inman J, Gonzales RA, Harrison MJ, Paiva NL, Scott AD, Weller JW, May GD. Bell CJ, et al. Among authors: farmer ad. Nucleic Acids Res. 2001 Jan 1;29(1):114-7. doi: 10.1093/nar/29.1.114. Nucleic Acids Res. 2001. PMID: 11125064 Free PMC article.
205 results