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A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.
Fonseca V, Libin PJK, Theys K, Faria NR, Nunes MRT, Restovic MI, Freire M, Giovanetti M, Cuypers L, Nowé A, Abecasis A, Deforche K, Santiago GA, Siqueira IC, San EJ, Machado KCB, Azevedo V, Filippis AMB, Cunha RVD, Pybus OG, Vandamme AM, Alcantara LCJ, de Oliveira T. Fonseca V, et al. Among authors: faria nr. PLoS Negl Trop Dis. 2019 May 8;13(5):e0007231. doi: 10.1371/journal.pntd.0007231. eCollection 2019 May. PLoS Negl Trop Dis. 2019. PMID: 31067235 Free PMC article.
Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon.
Faria NR, Suchard MA, Abecasis A, Sousa JD, Ndembi N, Bonfim I, Camacho RJ, Vandamme AM, Lemey P. Faria NR, et al. Infect Genet Evol. 2012 Mar;12(2):453-60. doi: 10.1016/j.meegid.2011.04.028. Epub 2011 May 4. Infect Genet Evol. 2012. PMID: 21565285 Free PMC article.
Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A.
Faria NR, Hodges-Mameletzis I, Silva JC, Rodés B, Erasmus S, Paolucci S, Ruelle J, Pieniazek D, Taveira N, Treviño A, Gonçalves MF, Jallow S, Xu L, Camacho RJ, Soriano V, Goubau P, de Sousa JD, Vandamme AM, Suchard MA, Lemey P. Faria NR, et al. J Gen Virol. 2012 Apr;93(Pt 4):889-899. doi: 10.1099/vir.0.038638-0. Epub 2011 Dec 21. J Gen Virol. 2012. PMID: 22190015 Free PMC article.
Phylogeography of dengue virus serotype 4, Brazil, 2010-2011.
Nunes MR, Faria NR, Vasconcelos HB, Medeiros DB, Silva de Lima CP, Carvalho VL, Pinto da Silva EV, Cardoso JF, Sousa EC Jr, Nunes KN, Rodrigues SG, Abecasis AB, Suchard MA, Lemey P, Vasconcelos PF. Nunes MR, et al. Among authors: faria nr. Emerg Infect Dis. 2012 Nov;18(11):1858-64. doi: 10.3201/eid1811.120217. Emerg Infect Dis. 2012. PMID: 23092706 Free PMC article.
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.
Pineda-Peña AC, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, Gómez-López A, Camacho RJ, de Oliveira T, Vandamme AM. Pineda-Peña AC, et al. Among authors: faria nr. Infect Genet Evol. 2013 Oct;19:337-48. doi: 10.1016/j.meegid.2013.04.032. Epub 2013 May 7. Infect Genet Evol. 2013. PMID: 23660484 Free article.
Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil.
Nunes MR, Palacios G, Faria NR, Sousa EC Jr, Pantoja JA, Rodrigues SG, Carvalho VL, Medeiros DB, Savji N, Baele G, Suchard MA, Lemey P, Vasconcelos PF, Lipkin WI. Nunes MR, et al. Among authors: faria nr. PLoS Negl Trop Dis. 2014 Apr 17;8(4):e2769. doi: 10.1371/journal.pntd.0002769. eCollection 2014 Apr. PLoS Negl Trop Dis. 2014. PMID: 24743730 Free PMC article.
Emergence and potential for spread of Chikungunya virus in Brazil.
Nunes MR, Faria NR, de Vasconcelos JM, Golding N, Kraemer MU, de Oliveira LF, Azevedo Rdo S, da Silva DE, da Silva EV, da Silva SP, Carvalho VL, Coelho GE, Cruz AC, Rodrigues SG, Vianez JL Jr, Nunes BT, Cardoso JF, Tesh RB, Hay SI, Pybus OG, Vasconcelos PF. Nunes MR, et al. Among authors: faria nr. BMC Med. 2015 Apr 30;13:102. doi: 10.1186/s12916-015-0348-x. BMC Med. 2015. PMID: 25976325 Free PMC article.
178 results