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Alzheimer-related genes show accelerated evolution.
Nitsche A, Arnold C, Ueberham U, Reiche K, Fallmann J, Hackermüller J, Horn F, Stadler PF, Arendt T. Nitsche A, et al. Among authors: fallmann j. Mol Psychiatry. 2021 Oct;26(10):5790-5796. doi: 10.1038/s41380-020-0680-1. Epub 2020 Mar 13. Mol Psychiatry. 2021. PMID: 32203153 Free PMC article.
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: fallmann j. Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Sci Rep. 2016. PMID: 27713552 Free PMC article.
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Grüning BA, Fallmann J, Yusuf D, Will S, Erxleben A, Eggenhofer F, Houwaart T, Batut B, Videm P, Bagnacani A, Wolfien M, Lott SC, Hoogstrate Y, Hess WR, Wolkenhauer O, Hoffmann S, Akalin A, Ohler U, Stadler PF, Backofen R. Grüning BA, et al. Among authors: fallmann j. Nucleic Acids Res. 2017 Jul 3;45(W1):W560-W566. doi: 10.1093/nar/gkx409. Nucleic Acids Res. 2017. PMID: 28582575 Free PMC article.
Recent advances in RNA folding.
Fallmann J, Will S, Engelhardt J, Grüning B, Backofen R, Stadler PF. Fallmann J, et al. J Biotechnol. 2017 Nov 10;261:97-104. doi: 10.1016/j.jbiotec.2017.07.007. Epub 2017 Jul 8. J Biotechnol. 2017. PMID: 28690134 Free article. Review.
Accurate mapping of tRNA reads.
Hoffmann A, Fallmann J, Vilardo E, Mörl M, Stadler PF, Amman F. Hoffmann A, et al. Among authors: fallmann j. Bioinformatics. 2018 Apr 1;34(7):1116-1124. doi: 10.1093/bioinformatics/btx756. Bioinformatics. 2018. PMID: 29228294
The RNA workbench 2.0: next generation RNA data analysis.
Fallmann J, Videm P, Bagnacani A, Batut B, Doyle MA, Klingstrom T, Eggenhofer F, Stadler PF, Backofen R, Grüning B. Fallmann J, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W511-W515. doi: 10.1093/nar/gkz353. Nucleic Acids Res. 2019. PMID: 31073612 Free PMC article.
38 results