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Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution.
Nat Genet. 2023 Dec;55(12):2255-2268. doi: 10.1038/s41588-023-01586-6. Epub 2023 Nov 30.
Nat Genet. 2023.
PMID: 38036787
Free PMC article.
Identifying genetic variants that influence the abundance of cell states in single-cell data.
Rumker L, Sakaue S, Reshef Y, Kang JB, Yazar S, Alquicira-Hernandez J, Valencia C, Lagattuta KA, Mah-Som A, Nathan A, Powell JE, Loh PR, Raychaudhuri S.
Rumker L, et al.
bioRxiv [Preprint]. 2023 Nov 15:2023.11.13.566919. doi: 10.1101/2023.11.13.566919.
bioRxiv. 2023.
PMID: 38014313
Free PMC article.
Preprint.
No abstract available.
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Tutorial: a statistical genetics guide to identifying HLA alleles driving complex disease.
Sakaue S, Gurajala S, Curtis M, Luo Y, Choi W, Ishigaki K, Kang JB, Rumker L, Deutsch AJ, Schönherr S, Forer L, LeFaive J, Fuchsberger C, Han B, Lenz TL, de Bakker PIW, Okada Y, Smith AV, Raychaudhuri S.
Sakaue S, et al.
Nat Protoc. 2023 Sep;18(9):2625-2641. doi: 10.1038/s41596-023-00853-4. Epub 2023 Jul 26.
Nat Protoc. 2023.
PMID: 37495751
Free PMC article.
Review.
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Methods and Insights from Single-Cell Expression Quantitative Trait Loci.
Kang JB, Raveane A, Nathan A, Soranzo N, Raychaudhuri S.
Kang JB, et al.
Annu Rev Genomics Hum Genet. 2023 Aug 25;24:277-303. doi: 10.1146/annurev-genom-101422-100437. Epub 2023 May 17.
Annu Rev Genomics Hum Genet. 2023.
PMID: 37196361
Free PMC article.
Review.
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Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution.
Kang JB, Shen AZ, Sakaue S, Luo Y, Gurajala S, Nathan A, Rumker L, Aguiar VRC, Valencia C, Lagattuta K, Zhang F, Jonsson AH, Yazar S, Alquicira-Hernandez J, Khalili H, Ananthakrishnan AN, Jagadeesh K, Dey K; Accelerating Medicines Partnership Program: Rheumatoid Arthritis and Systemic Lupus Erythematosus (AMP RA/SLE) Network; Daly MJ, Xavier RJ, Donlin LT, Anolik JH, Powell JE, Rao DA, Brenner MB, Gutierrez-Arcelus M, Raychaudhuri S.
Kang JB, et al.
medRxiv [Preprint]. 2023 Mar 20:2023.03.14.23287257. doi: 10.1101/2023.03.14.23287257.
medRxiv. 2023.
PMID: 36993194
Free PMC article.
Updated.
Preprint.
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