Förstner KU - Search Results

1

Computational Analysis of RNA-Protein Interactions via Deep Sequencing.

Li L, Förstner KU, Chao Y. Li L, et al. Among authors: forstner ku. Methods Mol Biol. 2018;1751:171-182. doi: 10.1007/978-1-4939-7710-9_12. Methods Mol Biol. 2018. PMID: 29508297

2

RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant.

Krysciak D, Grote J, Rodriguez Orbegoso M, Utpatel C, Förstner KU, Li L, Schmeisser C, Krishnan HB, Streit WR. Krysciak D, et al. Among authors: forstner ku. Appl Environ Microbiol. 2014 Sep;80(18):5655-71. doi: 10.1128/AEM.01835-14. Epub 2014 Jul 7. Appl Environ Microbiol. 2014. PMID: 25002423 Free PMC article.

3

READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data.

Förstner KU, Vogel J, Sharma CM. Förstner KU, et al. Bioinformatics. 2014 Dec 1;30(23):3421-3. doi: 10.1093/bioinformatics/btu533. Epub 2014 Aug 13. Bioinformatics. 2014. PMID: 25123900

4

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42.

Fan B, Li L, Chao Y, Förstner K, Vogel J, Borriss R, Wu XQ. Fan B, et al. PLoS One. 2015 Nov 5;10(11):e0142002. doi: 10.1371/journal.pone.0142002. eCollection 2015. PLoS One. 2015. PMID: 26540162 Free PMC article.

5

Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions.

Westermann AJ, Förstner KU, Amman F, Barquist L, Chao Y, Schulte LN, Müller L, Reinhardt R, Stadler PF, Vogel J. Westermann AJ, et al. Among authors: forstner ku. Nature. 2016 Jan 28;529(7587):496-501. doi: 10.1038/nature16547. Epub 2016 Jan 20. Nature. 2016. PMID: 26789254

6

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein.

Smirnov A, Förstner KU, Holmqvist E, Otto A, Günster R, Becher D, Reinhardt R, Vogel J. Smirnov A, et al. Among authors: forstner ku. Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11591-11596. doi: 10.1073/pnas.1609981113. Epub 2016 Sep 26. Proc Natl Acad Sci U S A. 2016. PMID: 27671629 Free PMC article.

7

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.

Chao Y, Li L, Girodat D, Förstner KU, Said N, Corcoran C, Śmiga M, Papenfort K, Reinhardt R, Wieden HJ, Luisi BF, Vogel J. Chao Y, et al. Among authors: forstner ku. Mol Cell. 2017 Jan 5;65(1):39-51. doi: 10.1016/j.molcel.2016.11.002. Mol Cell. 2017. PMID: 28061332 Free PMC article.

8

APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins.

Sharan M, Förstner KU, Eulalio A, Vogel J. Sharan M, et al. Among authors: forstner ku. Nucleic Acids Res. 2017 Jun 20;45(11):e96. doi: 10.1093/nar/gkx137. Nucleic Acids Res. 2017. PMID: 28334975 Free PMC article.

9

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium.

Westermann AJ, Venturini E, Sellin ME, Förstner KU, Hardt WD, Vogel J. Westermann AJ, et al. Among authors: forstner ku. mBio. 2019 Jan 2;10(1):e02504-18. doi: 10.1128/mBio.02504-18. mBio. 2019. PMID: 30602583 Free PMC article.

10

High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates.

Dugar G, Herbig A, Förstner KU, Heidrich N, Reinhardt R, Nieselt K, Sharma CM. Dugar G, et al. Among authors: forstner ku. PLoS Genet. 2013 May;9(5):e1003495. doi: 10.1371/journal.pgen.1003495. Epub 2013 May 16. PLoS Genet. 2013. PMID: 23696746 Free PMC article.

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