Förstner KU - Search Results

1

Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, Scott C, Smith-Unna R, Vieira BM; as part of the AllBio: Open Science & Reproducibility Best Practice Workshop. Aleksic J, et al. Among authors: forstner ku. F1000Res. 2014 Nov 12;3:271. doi: 10.12688/f1000research.5686.2. eCollection 2014. F1000Res. 2014. PMID: 25653839 Free PMC article.

2

Ten simple rules for organizing an unconference.

Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, Wood NT. Budd A, et al. Among authors: forstner ku. PLoS Comput Biol. 2015 Jan 29;11(1):e1003905. doi: 10.1371/journal.pcbi.1003905. eCollection 2015 Jan. PLoS Comput Biol. 2015. PMID: 25633715 Free PMC article. No abstract available.

3

APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins.

Sharan M, Förstner KU, Eulalio A, Vogel J. Sharan M, et al. Among authors: forstner ku. Nucleic Acids Res. 2017 Jun 20;45(11):e96. doi: 10.1093/nar/gkx137. Nucleic Acids Res. 2017. PMID: 28334975 Free PMC article.

4

Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection.

Maudet C, Mano M, Sunkavalli U, Sharan M, Giacca M, Förstner KU, Eulalio A. Maudet C, et al. Among authors: forstner ku. Nat Commun. 2014 Aug 22;5:4718. doi: 10.1038/ncomms5718. Nat Commun. 2014. PMID: 25146723 Free article.

5

READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data.

Förstner KU, Vogel J, Sharma CM. Förstner KU, et al. Bioinformatics. 2014 Dec 1;30(23):3421-3. doi: 10.1093/bioinformatics/btu533. Epub 2014 Aug 13. Bioinformatics. 2014. PMID: 25123900

6

The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation.

Berger P, Knödler M, Förstner KU, Berger M, Bertling C, Sharma CM, Vogel J, Karch H, Dobrindt U, Mellmann A. Berger P, et al. Among authors: forstner ku. Sci Rep. 2016 Oct 17;6:35307. doi: 10.1038/srep35307. Sci Rep. 2016. PMID: 27748404 Free PMC article.

7

Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli.

Hör J, Di Giorgio S, Gerovac M, Venturini E, Förstner KU, Vogel J. Hör J, et al. Among authors: forstner ku. Nucleic Acids Res. 2020 Sep 18;48(16):9301-9319. doi: 10.1093/nar/gkaa676. Nucleic Acids Res. 2020. PMID: 32813020 Free PMC article.

8

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein.

Smirnov A, Förstner KU, Holmqvist E, Otto A, Günster R, Becher D, Reinhardt R, Vogel J. Smirnov A, et al. Among authors: forstner ku. Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11591-11596. doi: 10.1073/pnas.1609981113. Epub 2016 Sep 26. Proc Natl Acad Sci U S A. 2016. PMID: 27671629 Free PMC article.

9

ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes.

Yu SH, Vogel J, Förstner KU. Yu SH, et al. Among authors: forstner ku. Gigascience. 2018 Sep 1;7(9):giy096. doi: 10.1093/gigascience/giy096. Gigascience. 2018. PMID: 30169674 Free PMC article.

10

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium.

Westermann AJ, Venturini E, Sellin ME, Förstner KU, Hardt WD, Vogel J. Westermann AJ, et al. Among authors: forstner ku. mBio. 2019 Jan 2;10(1):e02504-18. doi: 10.1128/mBio.02504-18. mBio. 2019. PMID: 30602583 Free PMC article.

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