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Detecting remotely related proteins by their interactions and sequence similarity.
Espadaler J, Aragüés R, Eswar N, Marti-Renom MA, Querol E, Avilés FX, Sali A, Oliva B. Espadaler J, et al. Among authors: eswar n. Proc Natl Acad Sci U S A. 2005 May 17;102(20):7151-6. doi: 10.1073/pnas.0500831102. Epub 2005 May 9. Proc Natl Acad Sci U S A. 2005. PMID: 15883372 Free PMC article.
DBAli tools: mining the protein structure space.
Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A. Marti-Renom MA, et al. Among authors: eswar n. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W393-7. doi: 10.1093/nar/gkm236. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478513 Free PMC article.
Comparative protein structure modeling using Modeller.
Eswar N, Webb B, Marti-Renom MA, Madhusudhan MS, Eramian D, Shen MY, Pieper U, Sali A. Eswar N, et al. Curr Protoc Bioinformatics. 2006 Oct;Chapter 5:Unit-5.6. doi: 10.1002/0471250953.bi0506s15. Curr Protoc Bioinformatics. 2006. PMID: 18428767 Free PMC article.
EVA: Evaluation of protein structure prediction servers.
Koh IY, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, Rost B. Koh IY, et al. Among authors: eswar n. Nucleic Acids Res. 2003 Jul 1;31(13):3311-5. doi: 10.1093/nar/gkg619. Nucleic Acids Res. 2003. PMID: 12824315 Free PMC article.
Tools for comparative protein structure modeling and analysis.
Eswar N, John B, Mirkovic N, Fiser A, Ilyin VA, Pieper U, Stuart AC, Marti-Renom MA, Madhusudhan MS, Yerkovich B, Sali A. Eswar N, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3375-80. doi: 10.1093/nar/gkg543. Nucleic Acids Res. 2003. PMID: 12824331 Free PMC article.
Protein structure modeling with MODELLER.
Eswar N, Eramian D, Webb B, Shen MY, Sali A. Eswar N, et al. Methods Mol Biol. 2008;426:145-59. doi: 10.1007/978-1-60327-058-8_8. Methods Mol Biol. 2008. PMID: 18542861
45 results