Ermakova E - Search Results

1

Beta-rich intermediates in denaturation of lysozyme: accelerated molecular dynamics simulations.

Ermakova E, Makshakova O, Zuev Y, Sedov I. Ermakova E, et al. J Biomol Struct Dyn. 2022;40(24):13953-13964. doi: 10.1080/07391102.2021.1997823. Epub 2021 Nov 9. J Biomol Struct Dyn. 2022. PMID: 34751100

2

Structural basis for regulation of stability and activity in glyceraldehyde-3-phosphate dehydrogenases. Differential scanning calorimetry and molecular dynamics.

Makshakova ON, Semenyuk PI, Kuravsky ML, Ermakova EA, Zuev YF, Muronetz VI. Makshakova ON, et al. J Struct Biol. 2015 May;190(2):224-35. doi: 10.1016/j.jsb.2015.04.004. Epub 2015 Apr 11. J Struct Biol. 2015. PMID: 25869789

3

Dynamics and thermodynamic properties of CXCL7 chemokine.

Herring CA, Singer CM, Ermakova EA, Khairutdinov BI, Zuev YF, Jacobs DJ, Nesmelova IV. Herring CA, et al. Proteins. 2015 Nov;83(11):1987-2007. doi: 10.1002/prot.24913. Epub 2015 Sep 2. Proteins. 2015. PMID: 26297927

4

Structure of Scots pine defensin 1 by spectroscopic methods and computational modeling.

Ermakova EA, Faizullin DA, Idiyatullin BZ, Khairutdinov BI, Mukhamedova LN, Tarasova NB, Toporkova YY, Osipova EV, Kovaleva V, Gogolev YV, Zuev YF, Nesmelova IV. Ermakova EA, et al. Int J Biol Macromol. 2016 Mar;84:142-52. doi: 10.1016/j.ijbiomac.2015.12.011. Epub 2015 Dec 11. Int J Biol Macromol. 2016. PMID: 26687241

5

Structural, biocomplexation and gene delivery properties of hydroxyethylated gemini surfactants with varied spacer length.

Zakharova LY, Gabdrakhmanov DR, Ibragimova AR, Vasilieva EA, Nizameev IR, Kadirov MK, Ermakova EA, Gogoleva NE, Faizullin DA, Pokrovsky AG, Korobeynikov VA, Cheresiz SV, Zuev YF. Zakharova LY, et al. Among authors: ermakova ea. Colloids Surf B Biointerfaces. 2016 Apr 1;140:269-277. doi: 10.1016/j.colsurfb.2015.12.045. Epub 2015 Dec 29. Colloids Surf B Biointerfaces. 2016. PMID: 26764110

6

Interaction of Scots Pine Defensin with Model Membrane by Coarse-Grained Molecular Dynamics.

Ermakova E, Zuev Y. Ermakova E, et al. J Membr Biol. 2017 Apr;250(2):205-216. doi: 10.1007/s00232-017-9950-5. Epub 2017 Feb 18. J Membr Biol. 2017. PMID: 28214974 Free article.

7

NMR structure, conformational dynamics, and biological activity of PsDef1 defensin from Pinus sylvestris.

Khairutdinov BI, Ermakova EA, Yusypovych YM, Bessolicina EK, Tarasova NB, Toporkova YY, Kovaleva V, Zuev YF, Nesmelova IV. Khairutdinov BI, et al. Biochim Biophys Acta Proteins Proteom. 2017 Aug;1865(8):1085-1094. doi: 10.1016/j.bbapap.2017.05.012. Epub 2017 May 17. Biochim Biophys Acta Proteins Proteom. 2017. PMID: 28528214 Free article.

8

Effect of ergosterol on the fungal membrane properties. All-atom and coarse-grained molecular dynamics study.

Ermakova E, Zuev Y. Ermakova E, et al. Chem Phys Lipids. 2017 Dec;209:45-53. doi: 10.1016/j.chemphyslip.2017.11.006. Epub 2017 Nov 6. Chem Phys Lipids. 2017. PMID: 29122611

9

Coarse-grained molecular dynamics of membrane semitoroidal pore formation in model lipid-peptide systems.

Ermakova E, Kurbanov R, Zuev Y. Ermakova E, et al. J Mol Graph Model. 2019 Mar;87:1-10. doi: 10.1016/j.jmgm.2018.11.003. Epub 2018 Nov 13. J Mol Graph Model. 2019. PMID: 30448729

10

Alkyl triphenylphosphonium surfactants as nucleic acid carriers: complexation efficacy toward DNA decamers, interaction with lipid bilayers and cytotoxicity studies.

Zakharova LY, Kaupova GI, Gabdrakhmanov DR, Gaynanova GA, Ermakova EA, Mukhitov AR, Galkina IV, Cheresiz SV, Pokrovsky AG, Skvortsova PV, Gogolev YV, Zuev YF. Zakharova LY, et al. Phys Chem Chem Phys. 2019 Aug 14;21(30):16706-16717. doi: 10.1039/c9cp02384d. Epub 2019 Jul 19. Phys Chem Chem Phys. 2019. PMID: 31321392

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