Eren AM - Search Results

1

Metabolic independence drives gut microbial colonization and resilience in health and disease.

Watson AR, Füssel J, Veseli I, DeLongchamp JZ, Silva M, Trigodet F, Lolans K, Shaiber A, Fogarty E, Runde JM, Quince C, Yu MK, Söylev A, Morrison HG, Lee STM, Kao D, Rubin DT, Jabri B, Louie T, Eren AM. Watson AR, et al. Among authors: eren am. Genome Biol. 2023 Apr 17;24(1):78. doi: 10.1186/s13059-023-02924-x. Genome Biol. 2023. PMID: 37069665 Free PMC article.

2

DRISEE overestimates errors in metagenomic sequencing data.

Eren AM, Morrison HG, Huse SM, Sogin ML. Eren AM, et al. Brief Bioinform. 2014 Sep;15(5):783-7. doi: 10.1093/bib/bbt010. Epub 2013 May 22. Brief Bioinform. 2014. PMID: 23698723 Free PMC article.

3

A filtering method to generate high quality short reads using illumina paired-end technology.

Eren AM, Vineis JH, Morrison HG, Sogin ML. Eren AM, et al. PLoS One. 2013 Jun 17;8(6):e66643. doi: 10.1371/journal.pone.0066643. Print 2013. PLoS One. 2013. PMID: 23799126 Free PMC article.

4

Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

Eren AM, Maignien L, Sul WJ, Murphy LG, Grim SL, Morrison HG, Sogin ML. Eren AM, et al. Methods Ecol Evol. 2013 Dec 1;4(12):1111-9. doi: 10.1111/2041-210X.12114. Methods Ecol Evol. 2013. PMID: 24358444 Free PMC article.

5

A single genus in the gut microbiome reflects host preference and specificity.

Eren AM, Sogin ML, Morrison HG, Vineis JH, Fisher JC, Newton RJ, McLellan SL. Eren AM, et al. ISME J. 2015 Jan;9(1):90-100. doi: 10.1038/ismej.2014.97. Epub 2014 Jun 17. ISME J. 2015. PMID: 24936765 Free PMC article.

6

Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences.

Eren AM, Morrison HG, Lescault PJ, Reveillaud J, Vineis JH, Sogin ML. Eren AM, et al. ISME J. 2015 Mar 17;9(4):968-79. doi: 10.1038/ismej.2014.195. ISME J. 2015. PMID: 25325381 Free PMC article.

7

Sewage reflects the microbiomes of human populations.

Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML. Newton RJ, et al. Among authors: eren am. mBio. 2015 Feb 24;6(2):e02574. doi: 10.1128/mBio.02574-14. mBio. 2015. PMID: 25714718 Free PMC article.

8

Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups.

Fisher JC, Eren AM, Green HC, Shanks OC, Morrison HG, Vineis JH, Sogin ML, McLellan SL. Fisher JC, et al. Among authors: eren am. Appl Environ Microbiol. 2015 Oct;81(20):7023-33. doi: 10.1128/AEM.01524-15. Epub 2015 Jul 31. Appl Environ Microbiol. 2015. PMID: 26231648 Free PMC article.

9

Anvi'o: an advanced analysis and visualization platform for 'omics data.

Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO. Eren AM, et al. PeerJ. 2015 Oct 8;3:e1319. doi: 10.7717/peerj.1319. eCollection 2015. PeerJ. 2015. PMID: 26500826 Free PMC article.

10

Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition.

Quince C, Ijaz UZ, Loman N, Eren AM, Saulnier D, Russell J, Haig SJ, Calus ST, Quick J, Barclay A, Bertz M, Blaut M, Hansen R, McGrogan P, Russell RK, Edwards CA, Gerasimidis K. Quince C, et al. Among authors: eren am. Am J Gastroenterol. 2015 Dec;110(12):1718-29; quiz 1730. doi: 10.1038/ajg.2015.357. Epub 2015 Nov 3. Am J Gastroenterol. 2015. PMID: 26526081 Free PMC article.

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