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Bacteriome.org--an integrated protein interaction database for E. coli.
Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Su C, et al. Among authors: emili a. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. doi: 10.1093/nar/gkm807. Epub 2007 Oct 16. Nucleic Acids Res. 2008. PMID: 17942431 Free PMC article.
eSGA: E. coli synthetic genetic array analysis.
Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A. Butland G, et al. Among authors: emili a. Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239. Nat Methods. 2008. PMID: 18677321
Target identification by chromatographic co-elution: monitoring of drug-protein interactions without immobilization or chemical derivatization.
Chan JN, Vuckovic D, Sleno L, Olsen JB, Pogoutse O, Havugimana P, Hewel JA, Bajaj N, Wang Y, Musteata MF, Nislow C, Emili A. Chan JN, et al. Among authors: emili a. Mol Cell Proteomics. 2012 Jul;11(7):M111.016642. doi: 10.1074/mcp.M111.016642. Epub 2012 Feb 22. Mol Cell Proteomics. 2012. PMID: 22357554 Free PMC article.
A census of human soluble protein complexes.
Havugimana PC, Hart GT, Nepusz T, Yang H, Turinsky AL, Li Z, Wang PI, Boutz DR, Fong V, Phanse S, Babu M, Craig SA, Hu P, Wan C, Vlasblom J, Dar VU, Bezginov A, Clark GW, Wu GC, Wodak SJ, Tillier ER, Paccanaro A, Marcotte EM, Emili A. Havugimana PC, et al. Among authors: emili a. Cell. 2012 Aug 31;150(5):1068-81. doi: 10.1016/j.cell.2012.08.011. Cell. 2012. PMID: 22939629 Free PMC article.
Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.
Babu M, Vlasblom J, Pu S, Guo X, Graham C, Bean BD, Burston HE, Vizeacoumar FJ, Snider J, Phanse S, Fong V, Tam YY, Davey M, Hnatshak O, Bajaj N, Chandran S, Punna T, Christopolous C, Wong V, Yu A, Zhong G, Li J, Stagljar I, Conibear E, Wodak SJ, Emili A, Greenblatt JF. Babu M, et al. Among authors: emili a. Nature. 2012 Sep 27;489(7417):585-9. doi: 10.1038/nature11354. Epub 2012 Sep 2. Nature. 2012. PMID: 22940862
ComplexQuant: high-throughput computational pipeline for the global quantitative analysis of endogenous soluble protein complexes using high resolution protein HPLC and precision label-free LC/MS/MS.
Wan C, Liu J, Fong V, Lugowski A, Stoilova S, Bethune-Waddell D, Borgeson B, Havugimana PC, Marcotte EM, Emili A. Wan C, et al. Among authors: emili a. J Proteomics. 2013 Apr 9;81:102-11. doi: 10.1016/j.jprot.2012.10.001. Epub 2012 Oct 12. J Proteomics. 2013. PMID: 23063720
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