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Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.
Kneppers J, Severson TM, Siefert JC, Schol P, Joosten SEP, Yu IPL, Huang CF, Morova T, Altıntaş UB, Giambartolomei C, Seo JH, Baca SC, Carneiro I, Emberly E, Pasaniuc B, Jerónimo C, Henrique R, Freedman ML, Wessels LFA, Lack NA, Bergman AM, Zwart W. Kneppers J, et al. Among authors: emberly e. Nat Commun. 2022 Nov 30;13(1):7367. doi: 10.1038/s41467-022-35135-2. Nat Commun. 2022. PMID: 36450752 Free PMC article.
Functional mapping of androgen receptor enhancer activity.
Huang CF, Lingadahalli S, Morova T, Ozturan D, Hu E, Yu IPL, Linder S, Hoogstraat M, Stelloo S, Sar F, van der Poel H, Altintas UB, Saffarzadeh M, Le Bihan S, McConeghy B, Gokbayrak B, Feng FY, Gleave ME, Bergman AM, Collins C, Hach F, Zwart W, Emberly E, Lack NA. Huang CF, et al. Among authors: emberly e. Genome Biol. 2021 May 11;22(1):149. doi: 10.1186/s13059-021-02339-6. Genome Biol. 2021. PMID: 33975627 Free PMC article.
Substrate stiffness tunes the dynamics of polyvalent rolling motors.
Korosec CS, Jindal L, Schneider M, Calderon de la Barca I, Zuckermann MJ, Forde NR, Emberly E. Korosec CS, et al. Among authors: emberly e. Soft Matter. 2021 Feb 19;17(6):1468-1479. doi: 10.1039/d0sm01811b. Soft Matter. 2021. PMID: 33347523
DNA segregation under Par protein control.
Jindal L, Emberly E. Jindal L, et al. Among authors: emberly e. PLoS One. 2019 Jul 18;14(7):e0218520. doi: 10.1371/journal.pone.0218520. eCollection 2019. PLoS One. 2019. PMID: 31318889 Free PMC article.
Dense neural networks for predicting chromatin conformation.
Farré P, Heurteau A, Cuvier O, Emberly E. Farré P, et al. Among authors: emberly e. BMC Bioinformatics. 2018 Oct 11;19(1):372. doi: 10.1186/s12859-018-2286-z. BMC Bioinformatics. 2018. PMID: 30314429 Free PMC article.
A maximum-entropy model for predicting chromatin contacts.
Farré P, Emberly E. Farré P, et al. Among authors: emberly e. PLoS Comput Biol. 2018 Feb 5;14(2):e1005956. doi: 10.1371/journal.pcbi.1005956. eCollection 2018 Feb. PLoS Comput Biol. 2018. PMID: 29401453 Free PMC article.
47 results