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A deep learning approach reveals unexplored landscape of viral expression in cancer.
Nat Commun. 2023 Feb 11;14(1):785. doi: 10.1038/s41467-023-36336-z.
Nat Commun. 2023.
PMID: 36774364
Free PMC article.
Computational Methods Summarizing Mutational Patterns in Cancer: Promise and Limitations for Clinical Applications.
Patterson A, Elbasir A, Tian B, Auslander N.
Patterson A, et al. Among authors: elbasir a.
Cancers (Basel). 2023 Mar 24;15(7):1958. doi: 10.3390/cancers15071958.
Cancers (Basel). 2023.
PMID: 37046619
Free PMC article.
Review.
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Microbial gene expression analysis of healthy and cancerous esophagus uncovers bacterial biomarkers of clinical outcomes.
Schäffer DE, Li W, Elbasir A, Altieri DC, Long Q, Auslander N.
Schäffer DE, et al. Among authors: elbasir a.
ISME Commun. 2023 Dec 5;3(1):128. doi: 10.1038/s43705-023-00338-1.
ISME Commun. 2023.
PMID: 38049632
Free PMC article.
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Multi-omics and machine learning reveal context-specific gene regulatory activities of PML::RARA in acute promyelocytic leukemia.
Villiers W, Kelly A, He X, Kaufman-Cook J, Elbasir A, Bensmail H, Lavender P, Dillon R, Mifsud B, Osborne CS.
Villiers W, et al. Among authors: elbasir a.
Nat Commun. 2023 Feb 9;14(1):724. doi: 10.1038/s41467-023-36262-0.
Nat Commun. 2023.
PMID: 36759620
Free PMC article.
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A modeling framework for embedding-based predictions for compound-viral protein activity.
Mall R, Elbasir A, Almeer H, Islam Z, Kolatkar PR, Chawla S, Ullah E.
Mall R, et al. Among authors: elbasir a.
Bioinformatics. 2021 Sep 9;37(17):2544-2555. doi: 10.1093/bioinformatics/btab130.
Bioinformatics. 2021.
PMID: 33638345
Free PMC article.
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Prediction and mechanistic analysis of drug-induced liver injury (DILI) based on chemical structure.
Liu A, Walter M, Wright P, Bartosik A, Dolciami D, Elbasir A, Yang H, Bender A.
Liu A, et al. Among authors: elbasir a.
Biol Direct. 2021 Jan 18;16(1):6. doi: 10.1186/s13062-020-00285-0.
Biol Direct. 2021.
PMID: 33461600
Free PMC article.
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BCrystal: an interpretable sequence-based protein crystallization predictor.
Elbasir A, Mall R, Kunji K, Rawi R, Islam Z, Chuang GY, Kolatkar PR, Bensmail H.
Elbasir A, et al.
Bioinformatics. 2020 Mar 1;36(5):1429-1438. doi: 10.1093/bioinformatics/btz762.
Bioinformatics. 2020.
PMID: 31603511
Free PMC article.
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DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction.
Elbasir A, Moovarkumudalvan B, Kunji K, Kolatkar PR, Mall R, Bensmail H.
Elbasir A, et al.
Bioinformatics. 2019 Jul 1;35(13):2216-2225. doi: 10.1093/bioinformatics/bty953.
Bioinformatics. 2019.
PMID: 30462171
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