Eklund AC - Search Results

1

Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers.

Saini SK, Ørskov AD, Bjerregaard AM, Unnikrishnan A, Holmberg-Thydén S, Borch A, Jensen KV, Anande G, Bentzen AK, Marquard AM, Tamhane T, Treppendahl MB, Gang AO, Dufva IH, Szallasi Z, Ternette N, Pedersen AG, Eklund AC, Pimanda J, Grønbæk K, Hadrup SR. Saini SK, et al. Among authors: eklund ac. Nat Commun. 2020 Nov 9;11(1):5660. doi: 10.1038/s41467-020-19464-8. Nat Commun. 2020. PMID: 33168830 Free PMC article.

2

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.

Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z. Carter SL, et al. Among authors: eklund ac. BMC Bioinformatics. 2005 Apr 25;6:107. doi: 10.1186/1471-2105-6-107. BMC Bioinformatics. 2005. PMID: 15850491 Free PMC article.

3

A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers.

Carter SL, Eklund AC, Kohane IS, Harris LN, Szallasi Z. Carter SL, et al. Among authors: eklund ac. Nat Genet. 2006 Sep;38(9):1043-8. doi: 10.1038/ng1861. Epub 2006 Aug 20. Nat Genet. 2006. PMID: 16921376

4

Replacing cRNA targets with cDNA reduces microarray cross-hybridization.

Eklund AC, Turner LR, Chen P, Jensen RV, deFeo G, Kopf-Sill AR, Szallasi Z. Eklund AC, et al. Nat Biotechnol. 2006 Sep;24(9):1071-3. doi: 10.1038/nbt0906-1071. Nat Biotechnol. 2006. PMID: 16964210 No abstract available.

5

Correction of technical bias in clinical microarray data improves concordance with known biological information.

Eklund AC, Szallasi Z. Eklund AC, et al. Genome Biol. 2008;9(2):R26. doi: 10.1186/gb-2008-9-2-r26. Epub 2008 Feb 4. Genome Biol. 2008. PMID: 18248669 Free PMC article.

6

A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes.

Lage K, Hansen NT, Karlberg EO, Eklund AC, Roque FS, Donahoe PK, Szallasi Z, Jensen TS, Brunak S. Lage K, et al. Among authors: eklund ac. Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20870-5. doi: 10.1073/pnas.0810772105. Epub 2008 Dec 22. Proc Natl Acad Sci U S A. 2008. PMID: 19104045 Free PMC article.

7

Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization.

Eklund AC, Friis P, Wernersson R, Szallasi Z. Eklund AC, et al. Nucleic Acids Res. 2010 Mar;38(4):e27. doi: 10.1093/nar/gkp1116. Epub 2009 Dec 6. Nucleic Acids Res. 2010. PMID: 19969549 Free PMC article.

8

Assessment of an RNA interference screen-derived mitotic and ceramide pathway metagene as a predictor of response to neoadjuvant paclitaxel for primary triple-negative breast cancer: a retrospective analysis of five clinical trials.

Juul N, Szallasi Z, Eklund AC, Li Q, Burrell RA, Gerlinger M, Valero V, Andreopoulou E, Esteva FJ, Symmans WF, Desmedt C, Haibe-Kains B, Sotiriou C, Pusztai L, Swanton C. Juul N, et al. Among authors: eklund ac. Lancet Oncol. 2010 Apr;11(4):358-65. doi: 10.1016/S1470-2045(10)70018-8. Epub 2010 Feb 26. Lancet Oncol. 2010. PMID: 20189874 Free article.

9

Minimising immunohistochemical false negative ER classification using a complementary 23 gene expression signature of ER status.

Li Q, Eklund AC, Juul N, Haibe-Kains B, Workman CT, Richardson AL, Szallasi Z, Swanton C. Li Q, et al. Among authors: eklund ac. PLoS One. 2010 Dec 1;5(12):e15031. doi: 10.1371/journal.pone.0015031. PLoS One. 2010. PMID: 21152022 Free PMC article.

10

Paradoxical relationship between chromosomal instability and survival outcome in cancer.

Birkbak NJ, Eklund AC, Li Q, McClelland SE, Endesfelder D, Tan P, Tan IB, Richardson AL, Szallasi Z, Swanton C. Birkbak NJ, et al. Among authors: eklund ac. Cancer Res. 2011 May 15;71(10):3447-52. doi: 10.1158/0008-5472.CAN-10-3667. Epub 2011 Jan 26. Cancer Res. 2011. PMID: 21270108 Free PMC article.

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