Egertson JD - Search Results

1

Data-Independent Acquisition Mass Spectrometry To Quantify Protein Levels in FFPE Tumor Biopsies for Molecular Diagnostics.

Kim YJ, Sweet SMM, Egertson JD, Sedgewick AJ, Woo S, Liao WL, Merrihew GE, Searle BC, Vaske C, Heaton R, MacCoss MJ, Hembrough T. Kim YJ, et al. Among authors: egertson jd. J Proteome Res. 2019 Jan 4;18(1):426-435. doi: 10.1021/acs.jproteome.8b00699. Epub 2018 Dec 12. J Proteome Res. 2019. PMID: 30481034 Free PMC article.

2

Comparison between procedures using SDS for shotgun proteomic analyses of complex samples.

Bereman MS, Egertson JD, MacCoss MJ. Bereman MS, et al. Among authors: egertson jd. Proteomics. 2011 Jul;11(14):2931-5. doi: 10.1002/pmic.201100045. Epub 2011 Jun 8. Proteomics. 2011. PMID: 21656683 Free PMC article.

3

Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics.

Bereman MS, Canterbury JD, Egertson JD, Horner J, Remes PM, Schwartz J, Zabrouskov V, MacCoss MJ. Bereman MS, et al. Among authors: egertson jd. Anal Chem. 2012 Feb 7;84(3):1533-9. doi: 10.1021/ac203210a. Epub 2012 Jan 12. Anal Chem. 2012. PMID: 22192247 Free PMC article.

4

De novo correction of mass measurement error in low resolution tandem MS spectra for shotgun proteomics.

Egertson JD, Eng JK, Bereman MS, Hsieh EJ, Merrihew GE, MacCoss MJ. Egertson JD, et al. J Am Soc Mass Spectrom. 2012 Dec;23(12):2075-82. doi: 10.1007/s13361-012-0482-z. Epub 2012 Sep 25. J Am Soc Mass Spectrom. 2012. PMID: 23007965 Free PMC article.

5

Multiplexed MS/MS for improved data-independent acquisition.

Egertson JD, Kuehn A, Merrihew GE, Bateman NW, MacLean BX, Ting YS, Canterbury JD, Marsh DM, Kellmann M, Zabrouskov V, Wu CC, MacCoss MJ. Egertson JD, et al. Nat Methods. 2013 Aug;10(8):744-6. doi: 10.1038/nmeth.2528. Epub 2013 Jun 23. Nat Methods. 2013. PMID: 23793237 Free PMC article.

6

Multiplexed peptide analysis using data-independent acquisition and Skyline.

Egertson JD, MacLean B, Johnson R, Xuan Y, MacCoss MJ. Egertson JD, et al. Nat Protoc. 2015 Jun;10(6):887-903. doi: 10.1038/nprot.2015.055. Epub 2015 May 21. Nat Protoc. 2015. PMID: 25996789 Free PMC article.

7

Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments.

Searle BC, Egertson JD, Bollinger JG, Stergachis AB, MacCoss MJ. Searle BC, et al. Among authors: egertson jd. Mol Cell Proteomics. 2015 Sep;14(9):2331-40. doi: 10.1074/mcp.M115.051300. Epub 2015 Jun 22. Mol Cell Proteomics. 2015. PMID: 26100116 Free PMC article.

8

A deeper look into Comet--implementation and features.

Eng JK, Hoopmann MR, Jahan TA, Egertson JD, Noble WS, MacCoss MJ. Eng JK, et al. Among authors: egertson jd. J Am Soc Mass Spectrom. 2015 Nov;26(11):1865-74. doi: 10.1007/s13361-015-1179-x. Epub 2015 Jun 27. J Am Soc Mass Spectrom. 2015. PMID: 26115965 Free PMC article.

9

Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data.

Ting YS, Egertson JD, Payne SH, Kim S, MacLean B, Käll L, Aebersold R, Smith RD, Noble WS, MacCoss MJ. Ting YS, et al. Among authors: egertson jd. Mol Cell Proteomics. 2015 Sep;14(9):2301-7. doi: 10.1074/mcp.O114.047035. Epub 2015 Jul 27. Mol Cell Proteomics. 2015. PMID: 26217018 Free PMC article.

10

Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards.

Bollinger JG, Stergachis AB, Johnson RS, Egertson JD, MacCoss MJ. Bollinger JG, et al. Among authors: egertson jd. Methods Mol Biol. 2016;1410:207-21. doi: 10.1007/978-1-4939-3524-6_12. Methods Mol Biol. 2016. PMID: 26867746 Free PMC article.

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