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Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.
Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK. Azam S, et al. Among authors: edwards d. Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1. Am J Bot. 2012. PMID: 22301893 Free article.
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.
Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo MC, Thudi M, Gowda CL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR. Varshney RK, et al. Among authors: edwards d. Nat Biotechnol. 2013 Mar;31(3):240-6. doi: 10.1038/nbt.2491. Epub 2013 Jan 27. Nat Biotechnol. 2013. PMID: 23354103 Free article.
A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies.
Ruperao P, Chan CK, Azam S, Karafiátová M, Hayashi S, Cížková J, Saxena RK, Simková H, Song C, Vrána J, Chitikineni A, Visendi P, Gaur PM, Millán T, Singh KB, Taran B, Wang J, Batley J, Doležel J, Varshney RK, Edwards D. Ruperao P, et al. Among authors: edwards d. Plant Biotechnol J. 2014 Aug;12(6):778-86. doi: 10.1111/pbi.12182. Epub 2014 Apr 5. Plant Biotechnol J. 2014. PMID: 24702794 Free article.
Structural variations in plant genomes.
Saxena RK, Edwards D, Varshney RK. Saxena RK, et al. Among authors: edwards d. Brief Funct Genomics. 2014 Jul;13(4):296-307. doi: 10.1093/bfgp/elu016. Epub 2014 Jun 6. Brief Funct Genomics. 2014. PMID: 24907366 Free PMC article.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P. Chalhoub B, et al. Among authors: edwards d. Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21. Science. 2014. PMID: 25146293 Free article.
Skim-based genotyping by sequencing.
Golicz AA, Bayer PE, Edwards D. Golicz AA, et al. Among authors: edwards d. Methods Mol Biol. 2015;1245:257-70. doi: 10.1007/978-1-4939-1966-6_19. Methods Mol Biol. 2015. PMID: 25373763
Gene loss in the fungal canola pathogen Leptosphaeria maculans.
Golicz AA, Martinez PA, Zander M, Patel DA, Van De Wouw AP, Visendi P, Fitzgerald TL, Edwards D, Batley J. Golicz AA, et al. Among authors: edwards d. Funct Integr Genomics. 2015 Mar;15(2):189-96. doi: 10.1007/s10142-014-0412-1. Epub 2014 Nov 25. Funct Integr Genomics. 2015. PMID: 25421464
3,800 results