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Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pan-genome hybrid selection.
Young MG, Straub TJ, Worby CJ, Metsky HC, Gnirke A, Bronson RA, van Dijk LR, Desjardins CA, Matranga C, Qu J, Dodson K, Schreiber HL 4th, Manson AL, Hultgren SJ, Earl AM. Young MG, et al. Among authors: earl am. bioRxiv [Preprint]. 2024 Feb 29:2024.02.29.582780. doi: 10.1101/2024.02.29.582780. bioRxiv. 2024. PMID: 38463963 Free PMC article. Preprint.
Global diversity of enterococci and description of 18 previously unknown species.
Schwartzman JA, Lebreton F, Salamzade R, Shea T, Martin MJ, Schaufler K, Urhan A, Abeel T, Camargo ILBC, Sgardioli BF, Prichula J, Guedes Frazzon AP, Giribet G, Van Tyne D, Treinish G, Innis CJ, Wagenaar JA, Whipple RM, Manson AL, Earl AM, Gilmore MS. Schwartzman JA, et al. Among authors: earl am. Proc Natl Acad Sci U S A. 2024 Mar 5;121(10):e2310852121. doi: 10.1073/pnas.2310852121. Epub 2024 Feb 28. Proc Natl Acad Sci U S A. 2024. PMID: 38416678 Free PMC article.
Discovery of a structural class of antibiotics with explainable deep learning.
Wong F, Zheng EJ, Valeri JA, Donghia NM, Anahtar MN, Omori S, Li A, Cubillos-Ruiz A, Krishnan A, Jin W, Manson AL, Friedrichs J, Helbig R, Hajian B, Fiejtek DK, Wagner FF, Soutter HH, Earl AM, Stokes JM, Renner LD, Collins JJ. Wong F, et al. Among authors: earl am. Nature. 2024 Feb;626(7997):177-185. doi: 10.1038/s41586-023-06887-8. Epub 2023 Dec 20. Nature. 2024. PMID: 38123686
Gut microbiome perturbation, antibiotic resistance, and Escherichia coli strain dynamics associated with international travel: a metagenomic analysis.
Worby CJ, Sridhar S, Turbett SE, Becker MV, Kogut L, Sanchez V, Bronson RA, Rao SR, Oliver E, Walker AT, Walters MS, Kelly P, Leung DT, Knouse MC, Hagmann SHF, Harris JB, Ryan ET, Earl AM, LaRocque RC. Worby CJ, et al. Among authors: earl am. Lancet Microbe. 2023 Oct;4(10):e790-e799. doi: 10.1016/S2666-5247(23)00147-7. Epub 2023 Sep 13. Lancet Microbe. 2023. PMID: 37716364 Free PMC article.
196 results