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New genome assembly of the barn owl (Tyto alba alba).
Ducrest AL, Neuenschwander S, Schmid-Siegert E, Pagni M, Train C, Dylus D, Nevers Y, Warwick Vesztrocy A, San-Jose LM, Dupasquier M, Dessimoz C, Xenarios I, Roulin A, Goudet J. Ducrest AL, et al. Among authors: dylus d. Ecol Evol. 2020 Feb 19;10(5):2284-2298. doi: 10.1002/ece3.5991. eCollection 2020 Mar. Ecol Evol. 2020. PMID: 32184981 Free PMC article.
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Altenhoff AM, Glover NM, Train CM, Kaleb K, Warwick Vesztrocy A, Dylus D, de Farias TM, Zile K, Stevenson C, Long J, Redestig H, Gonnet GH, Dessimoz C. Altenhoff AM, et al. Among authors: dylus d. Nucleic Acids Res. 2018 Jan 4;46(D1):D477-D485. doi: 10.1093/nar/gkx1019. Nucleic Acids Res. 2018. PMID: 29106550 Free PMC article.
RecPhyloXML: a format for reconciled gene trees.
Duchemin W, Gence G, Arigon Chifolleau AM, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davín AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, Posada D, Scornavacca C, Szöllosi G, Zhang L, Tannier É, Daubin V. Duchemin W, et al. Among authors: dylus d. Bioinformatics. 2018 Nov 1;34(21):3646-3652. doi: 10.1093/bioinformatics/bty389. Bioinformatics. 2018. PMID: 29762653 Free PMC article.
OMA standalone: orthology inference among public and custom genomes and transcriptomes.
Altenhoff AM, Levy J, Zarowiecki M, Tomiczek B, Warwick Vesztrocy A, Dalquen DA, Müller S, Telford MJ, Glover NM, Dylus D, Dessimoz C. Altenhoff AM, et al. Among authors: dylus d. Genome Res. 2019 Jul;29(7):1152-1163. doi: 10.1101/gr.243212.118. Epub 2019 Jun 24. Genome Res. 2019. PMID: 31235654 Free PMC article.
NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test.
Dylus D, Pillonel T, Opota O, Wüthrich D, Seth-Smith HMB, Egli A, Leo S, Lazarevic V, Schrenzel J, Laurent S, Bertelli C, Blanc DS, Neuenschwander S, Ramette A, Falquet L, Imkamp F, Keller PM, Kahles A, Oberhaensli S, Barbié V, Dessimoz C, Greub G, Lebrand A. Dylus D, et al. Front Microbiol. 2020 Nov 24;11:591093. doi: 10.3389/fmicb.2020.591093. eCollection 2020. Front Microbiol. 2020. PMID: 33424794 Free PMC article.
How to build phylogenetic species trees with OMA.
Dylus D, Nevers Y, Altenhoff AM, Gürtler A, Dessimoz C, Glover NM. Dylus D, et al. F1000Res. 2020 Jun 4;9:511. doi: 10.12688/f1000research.23790.2. eCollection 2020. F1000Res. 2020. PMID: 35722083 Free PMC article.
20 results