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Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach.
PLoS One. 2018 Mar 9;13(3):e0193900. doi: 10.1371/journal.pone.0193900. eCollection 2018.
PLoS One. 2018.
PMID: 29522539
Free PMC article.
Enzyme-free optical DNA mapping of the human genome using competitive binding.
Müller V, Dvirnas A, Andersson J, Singh V, Kk S, Johansson P, Ebenstein Y, Ambjörnsson T, Westerlund F.
Müller V, et al. Among authors: dvirnas a.
Nucleic Acids Res. 2019 Sep 5;47(15):e89. doi: 10.1093/nar/gkz489.
Nucleic Acids Res. 2019.
PMID: 31165870
Free PMC article.
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Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak.
Bikkarolla SK, Nordberg V, Rajer F, Müller V, Kabir MH, Kk S, Dvirnas A, Ambjörnsson T, Giske CG, Navér L, Sandegren L, Westerlund F.
Bikkarolla SK, et al. Among authors: dvirnas a.
mBio. 2019 Jul 9;10(4):e00347-19. doi: 10.1128/mBio.00347-19.
mBio. 2019.
PMID: 31289171
Free PMC article.
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Cultivation-Free Typing of Bacteria Using Optical DNA Mapping.
Müller V, Nyblom M, Johnning A, Wrande M, Dvirnas A, Kk S, Giske CG, Ambjörnsson T, Sandegren L, Kristiansson E, Westerlund F.
Müller V, et al. Among authors: dvirnas a.
ACS Infect Dis. 2020 May 8;6(5):1076-1084. doi: 10.1021/acsinfecdis.9b00464. Epub 2020 Apr 28.
ACS Infect Dis. 2020.
PMID: 32294378
Free PMC article.
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Detection of structural variations in densely-labelled optical DNA barcodes: A hidden Markov model approach.
Dvirnas A, Stewart C, Müller V, Bikkarolla SK, Frykholm K, Sandegren L, Kristiansson E, Westerlund F, Ambjörnsson T.
Dvirnas A, et al.
PLoS One. 2021 Nov 5;16(11):e0259670. doi: 10.1371/journal.pone.0259670. eCollection 2021.
PLoS One. 2021.
PMID: 34739528
Free PMC article.
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Strain-level bacterial typing directly from patient samples using optical DNA mapping.
Nyblom M, Johnning A, Frykholm K, Wrande M, Müller V, Goyal G, Robertsson M, Dvirnas A, Sewunet T, Kk S, Ambjörnsson T, Giske CG, Sandegren L, Kristiansson E, Westerlund F.
Nyblom M, et al. Among authors: dvirnas a.
Commun Med (Lond). 2023 Feb 23;3(1):31. doi: 10.1038/s43856-023-00259-z.
Commun Med (Lond). 2023.
PMID: 36823379
Free PMC article.
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Equilibrium melting probabilities of a DNA molecule with a defect: An exact solution of the Poland-Scheraga model.
Genthon A, Dvirnas A, Ambjörnsson T.
Genthon A, et al. Among authors: dvirnas a.
J Chem Phys. 2023 Oct 14;159(14):145102. doi: 10.1063/5.0168915.
J Chem Phys. 2023.
PMID: 37815110
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Photophysical image analysis: Unsupervised probabilistic thresholding for images from electron-multiplying charge-coupled devices.
Krog J, Dvirnas A, Ström OE, Beech JP, Tegenfeldt JO, Müller V, Westerlund F, Ambjörnsson T.
Krog J, et al. Among authors: dvirnas a.
PLoS One. 2024 Apr 5;19(4):e0300122. doi: 10.1371/journal.pone.0300122. eCollection 2024.
PLoS One. 2024.
PMID: 38578724
Free PMC article.
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