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Page 1
Emx2 underlies the development and evolution of marsupial gliding membranes.
Moreno JA, Dudchenko O, Feigin CY, Mereby SA, Chen Z, Ramos R, Almet AA, Sen H, Brack BJ, Johnson MR, Li S, Wang W, Gaska JM, Ploss A, Weisz D, Omer AD, Yao W, Colaric Z, Kaur P, Leger JS, Nie Q, Mena A, Flanagan JP, Keller G, Sanger T, Ostrow B, Plikus MV, Kvon EZ, Aiden EL, Mallarino R. Moreno JA, et al. Among authors: dudchenko o. Nature. 2024 May;629(8010):127-135. doi: 10.1038/s41586-024-07305-3. Epub 2024 Apr 24. Nature. 2024. PMID: 38658750 Free PMC article.
A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing.
Adastra PA, Durand NC, Mitra N, Pulido SG, Mahajan R, Blackburn A, Colaric ZL, Theisen JWM, Weisz D, Dudchenko O, Gnirke A, Rao SSP, Kaur P, Aiden EL, Aiden AP. Adastra PA, et al. Among authors: dudchenko o. PLoS One. 2023 Nov 30;18(11):e0294283. doi: 10.1371/journal.pone.0294283. eCollection 2023. PLoS One. 2023. PMID: 38032990 Free PMC article.
The ENCODE Uniform Analysis Pipelines.
Hitz BC, Lee JW, Jolanki O, Kagda MS, Graham K, Sud P, Gabdank I, Strattan JS, Sloan CA, Dreszer T, Rowe LD, Podduturi NR, Malladi VS, Chan ET, Davidson JM, Ho M, Miyasato S, Simison M, Tanaka F, Luo Y, Whaling I, Hong EL, Lee BT, Sandstrom R, Rynes E, Nelson J, Nishida A, Ingersoll A, Buckley M, Frerker M, Kim DS, Boley N, Trout D, Dobin A, Rahmanian S, Wyman D, Balderrama-Gutierrez G, Reese F, Durand NC, Dudchenko O, Weisz D, Rao SSP, Blackburn A, Gkountaroulis D, Sadr M, Olshansky M, Eliaz Y, Nguyen D, Bochkov I, Shamim MS, Mahajan R, Aiden E, Gingeras T, Heath S, Hirst M, Kent WJ, Kundaje A, Mortazavi A, Wold B, Cherry JM. Hitz BC, et al. Among authors: dudchenko o. Res Sq [Preprint]. 2023 Jul 19:rs.3.rs-3111932. doi: 10.21203/rs.3.rs-3111932/v1. Res Sq. 2023. PMID: 37503119 Free PMC article. Preprint.
Genomic signatures of barley breeding for environmental adaptation to the new continents.
Hu H, Wang P, Angessa TT, Zhang XQ, Chalmers KJ, Zhou G, Hill CB, Jia Y, Simpson C, Fuller J, Saxena A, Al Shamaileh H, Iqbal M, Chapman B, Kaur P, Dudchenko O, Aiden EL, Keeble-Gagnere G, Westcott S, Leah D, Tibbits JF, Waugh R, Langridge P, Varshney R, He T, Li C. Hu H, et al. Among authors: dudchenko o. Plant Biotechnol J. 2023 Sep;21(9):1719-1721. doi: 10.1111/pbi.14077. Epub 2023 Jul 27. Plant Biotechnol J. 2023. PMID: 37497741 Free PMC article. No abstract available.
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization.
Harris HL, Gu H, Olshansky M, Wang A, Farabella I, Eliaz Y, Kalluchi A, Krishna A, Jacobs M, Cauer G, Pham M, Rao SSP, Dudchenko O, Omer A, Mohajeri K, Kim S, Nichols MH, Davis ES, Gkountaroulis D, Udupa D, Aiden AP, Corces VG, Phanstiel DH, Noble WS, Nir G, Di Pierro M, Seo JS, Talkowski ME, Aiden EL, Rowley MJ. Harris HL, et al. Among authors: dudchenko o. Nat Commun. 2023 Jun 6;14(1):3303. doi: 10.1038/s41467-023-38429-1. Nat Commun. 2023. PMID: 37280210 Free PMC article.
Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes).
Kliver S, Houck ML, Perelman PL, Totikov A, Tomarovsky A, Dudchenko O, Omer AD, Colaric Z, Weisz D, Aiden EL, Chan S, Hastie A, Komissarov A, Ryder OA, Graphodatsky A, Johnson WE, Maldonado JE, Pukazhenthi BS, Marinari PE, Wildt DE, Koepfli KP. Kliver S, et al. Among authors: dudchenko o. J Hered. 2023 Aug 23;114(5):539-548. doi: 10.1093/jhered/esad035. J Hered. 2023. PMID: 37249392 Free PMC article.
The ENCODE Uniform Analysis Pipelines.
Hitz BC, Jin-Wook L, Jolanki O, Kagda MS, Graham K, Sud P, Gabdank I, Strattan JS, Sloan CA, Dreszer T, Rowe LD, Podduturi NR, Malladi VS, Chan ET, Davidson JM, Ho M, Miyasato S, Simison M, Tanaka F, Luo Y, Whaling I, Hong EL, Lee BT, Sandstrom R, Rynes E, Nelson J, Nishida A, Ingersoll A, Buckley M, Frerker M, Kim DS, Boley N, Trout D, Dobin A, Rahmanian S, Wyman D, Balderrama-Gutierrez G, Reese F, Durand NC, Dudchenko O, Weisz D, Rao SSP, Blackburn A, Gkountaroulis D, Sadr M, Olshansky M, Eliaz Y, Nguyen D, Bochkov I, Shamim MS, Mahajan R, Aiden E, Gingeras T, Heath S, Hirst M, Kent WJ, Kundaje A, Mortazavi A, Wold B, Cherry JM. Hitz BC, et al. Among authors: dudchenko o. bioRxiv [Preprint]. 2023 Apr 6:2023.04.04.535623. doi: 10.1101/2023.04.04.535623. bioRxiv. 2023. PMID: 37066421 Free PMC article. Preprint.
Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity.
Houck ML, Koepfli KP, Hains T, Khan R, Charter SJ, Fronczek JA, Misuraca AC, Kliver S, Perelman PL, Beklemisheva V, Graphodatsky A, Luo SJ, O'Brien SJ, Lim NT, Chin JSC, Guerra V, Tamazian G, Omer A, Weisz D, Kaemmerer K, Sturgeon G, Gaspard J, Hahn A, McDonough M, Garcia-Treviño I, Gentry J, Coke RL, Janecka JE, Harrigan RJ, Tinsman J, Smith TB, Aiden EL, Dudchenko O. Houck ML, et al. Among authors: dudchenko o. Chromosome Res. 2023 Apr 12;31(2):13. doi: 10.1007/s10577-023-09722-y. Chromosome Res. 2023. PMID: 37043058
54 results