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Learning for single-cell assignment.
Duan B, Zhu C, Chuai G, Tang C, Chen X, Chen S, Fu S, Li G, Liu Q. Duan B, et al. Sci Adv. 2020 Oct 30;6(44):eabd0855. doi: 10.1126/sciadv.abd0855. Print 2020 Oct. Sci Adv. 2020. PMID: 33127686 Free PMC article.
Integrating multiple references for single-cell assignment.
Duan B, Chen S, Chen X, Zhu C, Tang C, Wang S, Gao Y, Fu S, Liu Q. Duan B, et al. Nucleic Acids Res. 2021 Aug 20;49(14):e80. doi: 10.1093/nar/gkab380. Nucleic Acids Res. 2021. PMID: 34037791 Free PMC article.
DeepCRISPR: optimized CRISPR guide RNA design by deep learning.
Chuai G, Ma H, Yan J, Chen M, Hong N, Xue D, Zhou C, Zhu C, Chen K, Duan B, Gu F, Qu S, Huang D, Wei J, Liu Q. Chuai G, et al. Among authors: duan b. Genome Biol. 2018 Jun 26;19(1):80. doi: 10.1186/s13059-018-1459-4. Genome Biol. 2018. PMID: 29945655 Free PMC article.
DrSim: Similarity Learning for Transcriptional Phenotypic Drug Discovery.
Wei Z, Zhu S, Chen X, Zhu C, Duan B, Liu Q. Wei Z, et al. Among authors: duan b. Genomics Proteomics Bioinformatics. 2022 Oct;20(5):1028-1036. doi: 10.1016/j.gpb.2022.09.006. Epub 2022 Sep 29. Genomics Proteomics Bioinformatics. 2022. PMID: 36182102 Free PMC article.
Model-based understanding of single-cell CRISPR screening.
Duan B, Zhou C, Zhu C, Yu Y, Li G, Zhang S, Zhang C, Ye X, Ma H, Qu S, Zhang Z, Wang P, Sun S, Liu Q. Duan B, et al. Nat Commun. 2019 May 20;10(1):2233. doi: 10.1038/s41467-019-10216-x. Nat Commun. 2019. PMID: 31110232 Free PMC article.
845 results