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Detection of isoforms and genomic alterations by high-throughput full-length single-cell RNA sequencing in ovarian cancer.
Nat Commun. 2023 Nov 27;14(1):7780. doi: 10.1038/s41467-023-43387-9.
Nat Commun. 2023.
PMID: 38012143
Free PMC article.
scROSHI: robust supervised hierarchical identification of single cells.
Prummer M, Bertolini A, Bosshard L, Barkmann F, Yates J, Boeva V; Tumor Profiler Consortium; Stekhoven D, Singer F.
Prummer M, et al.
NAR Genom Bioinform. 2023 Jun 16;5(2):lqad058. doi: 10.1093/nargab/lqad058. eCollection 2023 Jun.
NAR Genom Bioinform. 2023.
PMID: 37332656
Free PMC article.
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ROS Induction Targets Persister Cancer Cells with Low Metabolic Activity in NRAS-Mutated Melanoma.
Eichhoff OM, Stoffel CI, Käsler J, Briker L, Turko P, Karsai G, Zila N, Paulitschke V, Cheng PF, Leitner A, Bileck A, Zamboni N, Irmisch A, Balazs Z, Tastanova A, Pascoal S, Johansen P, Wegmann R, Mena J, Othman A, Viswanathan VS, Wenzina J, Aloia A, Saltari A, Dzung A; TuPro Consortium; Krauthammer M, Schreiber SL, Hornemann T, Distel M, Snijder B, Dummer R, Levesque MP.
Eichhoff OM, et al.
Cancer Res. 2023 Apr 4;83(7):1128-1146. doi: 10.1158/0008-5472.CAN-22-1826.
Cancer Res. 2023.
PMID: 36946761
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Differential Roles for IL-1α and IL-1β in Pseudomonas aeruginosa Corneal Infection.
Ratitong B, Marshall ME, Dragan MA, Anunciado CM, Abbondante S, Pearlman E.
Ratitong B, et al. Among authors: dragan ma.
J Immunol. 2022 Aug 1;209(3):548-558. doi: 10.4049/jimmunol.2200110.
J Immunol. 2022.
PMID: 35851538
Free PMC article.
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The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.
Irmisch A, Bonilla X, Chevrier S, Lehmann KV, Singer F, Toussaint NC, Esposito C, Mena J, Milani ES, Casanova R, Stekhoven DJ, Wegmann R, Jacob F, Sobottka B, Goetze S, Kuipers J, Sarabia Del Castillo J, Prummer M, Tuncel MA, Menzel U, Jacobs A, Engler S, Sivapatham S, Frei AL, Gut G, Ficek J, Miglino N; Tumor Profiler Consortium; Aebersold R, Bacac M, Beerenwinkel N, Beisel C, Bodenmiller B, Dummer R, Heinzelmann-Schwarz V, Koelzer VH, Manz MG, Moch H, Pelkmans L, Snijder B, Theocharides APA, Tolnay M, Wicki A, Wollscheid B, Rätsch G, Levesque MP.
Irmisch A, et al.
Cancer Cell. 2021 Mar 8;39(3):288-293. doi: 10.1016/j.ccell.2021.01.004. Epub 2021 Jan 21.
Cancer Cell. 2021.
PMID: 33482122
Free article.
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GeneValidator: identify problems with protein-coding gene predictions.
Drăgan MA, Moghul I, Priyam A, Bustos C, Wurm Y.
Drăgan MA, et al.
Bioinformatics. 2016 May 15;32(10):1559-61. doi: 10.1093/bioinformatics/btw015. Epub 2016 Jan 18.
Bioinformatics. 2016.
PMID: 26787666
Free PMC article.
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