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The systems biology simulation core algorithm.
Keller R, Dörr A, Tabira A, Funahashi A, Ziller MJ, Adams R, Rodriguez N, Le Novère N, Hiroi N, Planatscher H, Zell A, Dräger A. Keller R, et al. Among authors: drager a. BMC Syst Biol. 2013 Jul 5;7:55. doi: 10.1186/1752-0509-7-55. BMC Syst Biol. 2013. PMID: 23826941 Free PMC article.
Harmonizing semantic annotations for computational models in biology.
Neal ML, König M, Nickerson D, Mısırlı G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, Gleeson P, Golebiewski M, Hucka M, Juty N, Myers C, Olivier BG, Sauro HM, Scharm M, Snoep JL, Touré V, Wipat A, Wolkenhauer O, Waltemath D. Neal ML, et al. Among authors: drager a. Brief Bioinform. 2019 Mar 22;20(2):540-550. doi: 10.1093/bib/bby087. Brief Bioinform. 2019. PMID: 30462164 Free PMC article. Review.
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
Hucka M, Bergmann FT, Chaouiya C, Dräger A, Hoops S, Keating SM, König M, Novère NL, Myers CJ, Olivier BG, Sahle S, Schaff JC, Sheriff R, Smith LP, Waltemath D, Wilkinson DJ, Zhang F. Hucka M, et al. Among authors: drager a. J Integr Bioinform. 2019 Jun 20;16(2):20190021. doi: 10.1515/jib-2019-0021. J Integr Bioinform. 2019. PMID: 31219795 Free PMC article.
Visualizing metabolic network dynamics through time-series metabolomic data.
Buchweitz LF, Yurkovich JT, Blessing C, Kohler V, Schwarzkopf F, King ZA, Yang L, Jóhannsson F, Sigurjónsson ÓE, Rolfsson Ó, Heinrich J, Dräger A. Buchweitz LF, et al. Among authors: drager a. BMC Bioinformatics. 2020 Apr 3;21(1):130. doi: 10.1186/s12859-020-3415-z. BMC Bioinformatics. 2020. PMID: 32245365 Free PMC article.
Systems biology graphical notation markup language (SBGNML) version 0.3.
Bergmann FT, Czauderna T, Dogrusoz U, Rougny A, Dräger A, Touré V, Mazein A, Blinov ML, Luna A. Bergmann FT, et al. Among authors: drager a. J Integr Bioinform. 2020 Jun 22;17(2-3):20200016. doi: 10.1515/jib-2020-0016. J Integr Bioinform. 2020. PMID: 32568733 Free PMC article.
BowTieBuilder: modeling signal transduction pathways.
Supper J, Spangenberg L, Planatscher H, Dräger A, Schröder A, Zell A. Supper J, et al. Among authors: drager a. BMC Syst Biol. 2009 Jun 30;3:67. doi: 10.1186/1752-0509-3-67. BMC Syst Biol. 2009. PMID: 19566957 Free PMC article.
132 results