Doruker P - Search Results

1

Allosteric interactions in the parathyroid hormone GPCR-arrestin complex formation.

Clark LJ, Krieger J, White AD, Bondarenko V, Lei S, Fang F, Lee JY, Doruker P, Böttke T, Jean-Alphonse F, Tang P, Gardella TJ, Xiao K, Sutkeviciute I, Coin I, Bahar I, Vilardaga JP. Clark LJ, et al. Among authors: doruker p. Nat Chem Biol. 2020 Oct;16(10):1096-1104. doi: 10.1038/s41589-020-0567-0. Epub 2020 Jul 6. Nat Chem Biol. 2020. PMID: 32632293 Free PMC article.

2

Precise druggability of the PTH type 1 receptor.

Sutkeviciute I, Lee JY, White AD, Maria CS, Peña KA, Savransky S, Doruker P, Li H, Lei S, Kaynak B, Tu C, Clark LJ, Sanker S, Gardella TJ, Chang W, Bahar I, Vilardaga JP. Sutkeviciute I, et al. Among authors: doruker p. Nat Chem Biol. 2022 Mar;18(3):272-280. doi: 10.1038/s41589-021-00929-w. Epub 2021 Dec 23. Nat Chem Biol. 2022. PMID: 34949836 Free PMC article.

3

Activation and Speciation Mechanisms in Class A GPCRs.

Wingert B, Doruker P, Bahar I. Wingert B, et al. Among authors: doruker p. J Mol Biol. 2022 Sep 15;434(17):167690. doi: 10.1016/j.jmb.2022.167690. Epub 2022 Jun 18. J Mol Biol. 2022. PMID: 35728652 Free PMC article.

4

Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior.

Zhang Y, Doruker P, Kaynak B, Zhang S, Krieger J, Li H, Bahar I. Zhang Y, et al. Among authors: doruker p. Curr Opin Struct Biol. 2020 Jun;62:14-21. doi: 10.1016/j.sbi.2019.11.002. Epub 2019 Nov 27. Curr Opin Struct Biol. 2020. PMID: 31785465 Free PMC article. Review.

5

GPCR kinases generate an APH1A phosphorylation barcode to regulate amyloid-β generation.

Todd NK, Huang Y, Lee JY, Doruker P, Krieger JM, Salisbury R, MacDonald M, Bahar I, Thathiah A. Todd NK, et al. Among authors: doruker p. Cell Rep. 2022 Jul 19;40(3):111110. doi: 10.1016/j.celrep.2022.111110. Cell Rep. 2022. PMID: 35858570 Free PMC article.

6

ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic Resolution.

Kurkcuoglu Z, Bahar I, Doruker P. Kurkcuoglu Z, et al. Among authors: doruker p. J Chem Theory Comput. 2016 Sep 13;12(9):4549-62. doi: 10.1021/acs.jctc.6b00319. Epub 2016 Aug 18. J Chem Theory Comput. 2016. PMID: 27494296 Free PMC article.

7

Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods.

Krieger JM, Doruker P, Scott AL, Perahia D, Bahar I. Krieger JM, et al. Among authors: doruker p. Curr Opin Struct Biol. 2020 Oct;64:34-41. doi: 10.1016/j.sbi.2020.05.013. Epub 2020 Jul 1. Curr Opin Struct Biol. 2020. PMID: 32622329 Free PMC article. Review.

8

Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions.

Kaynak BT, Bahar I, Doruker P. Kaynak BT, et al. Among authors: doruker p. Comput Struct Biotechnol J. 2020 Jun 18;18:1577-1586. doi: 10.1016/j.csbj.2020.06.020. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32637054 Free PMC article.

9

Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding.

Li H, Doruker P, Hu G, Bahar I. Li H, et al. Among authors: doruker p. Biophys J. 2020 Apr 7;118(7):1782-1794. doi: 10.1016/j.bpj.2020.01.046. Epub 2020 Feb 18. Biophys J. 2020. PMID: 32130874 Free PMC article.

10

ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python.

Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I. Zhang S, et al. Among authors: doruker p. Bioinformatics. 2021 Oct 25;37(20):3657-3659. doi: 10.1093/bioinformatics/btab187. Bioinformatics. 2021. PMID: 33822884 Free PMC article.

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