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uap: reproducible and robust HTS data analysis.
Kämpf C, Specht M, Scholz A, Puppel SH, Doose G, Reiche K, Schor J, Hackermüller J. Kämpf C, et al. Among authors: doose g. BMC Bioinformatics. 2019 Dec 12;20(1):664. doi: 10.1186/s12859-019-3219-1. BMC Bioinformatics. 2019. PMID: 31830916 Free PMC article.
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control.
Kretzmer H, Bernhart SH, Wang W, Haake A, Weniger MA, Bergmann AK, Betts MJ, Carrillo-de-Santa-Pau E, Doose G, Gutwein J, Richter J, Hovestadt V, Huang B, Rico D, Jühling F, Kolarova J, Lu Q, Otto C, Wagener R, Arnolds J, Burkhardt B, Claviez A, Drexler HG, Eberth S, Eils R, Flicek P, Haas S, Humme M, Karsch D, Kerstens HHD, Klapper W, Kreuz M, Lawerenz C, Lenzek D, Loeffler M, López C, MacLeod RAF, Martens JHA, Kulis M, Martín-Subero JI, Möller P, Nage I, Picelli S, Vater I, Rohde M, Rosenstiel P, Rosolowski M, Russell RB, Schilhabel M, Schlesner M, Stadler PF, Szczepanowski M, Trümper L, Stunnenberg HG, Küppers R, Ammerpohl O, Lichter P, Siebert R, Hoffmann S, Radlwimmer B. Kretzmer H, et al. Among authors: doose g. Nat Genet. 2015 Nov;47(11):1316-1325. doi: 10.1038/ng.3413. Epub 2015 Oct 5. Nat Genet. 2015. PMID: 26437030 Free PMC article.
Atypical RNAs in the coelacanth transcriptome.
Nitsche A, Doose G, Tafer H, Robinson M, Saha NR, Gerdol M, Canapa A, Hoffmann S, Amemiya CT, Stadler PF. Nitsche A, et al. Among authors: doose g. J Exp Zool B Mol Dev Evol. 2014 Sep;322(6):342-51. doi: 10.1002/jez.b.22542. Epub 2013 Oct 30. J Exp Zool B Mol Dev Evol. 2014. PMID: 24174405
Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: doose g. Sci Rep. 2017 Jan 11;7:39421. doi: 10.1038/srep39421. Sci Rep. 2017. PMID: 28074834 Free PMC article. No abstract available.
Rare Splice Variants in Long Non-Coding RNAs.
Sen R, Doose G, Stadler PF. Sen R, et al. Among authors: doose g. Noncoding RNA. 2017 Jul 5;3(3):23. doi: 10.3390/ncrna3030023. Noncoding RNA. 2017. PMID: 29657294 Free PMC article.
39 results