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A cis-regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation.
Cell Genom. 2022 Nov 9;2(11):100191. doi: 10.1016/j.xgen.2022.100191. Epub 2022 Oct 5.
Cell Genom. 2022.
PMID: 36742369
Free PMC article.
The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation.
Meyers JM, Ramanathan M, Shanderson RL, Donohue L, Ferguson I, Guo MG, Rao DS, Miao W, Reynolds D, Yang X, Zhao Y, Yang YY, Wang Y, Khavari PA.
Meyers JM, et al.
bioRxiv [Preprint]. 2021 Feb 23:2021.02.23.432450. doi: 10.1101/2021.02.23.432450.
bioRxiv. 2021.
PMID: 33655243
Free PMC article.
Updated.
Preprint.
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easyCLIP analysis of RNA-protein interactions incorporating absolute quantification.
Porter DF, Miao W, Yang X, Goda GA, Ji AL, Donohue LKH, Aleman MM, Dominguez D, Khavari PA.
Porter DF, et al. Among authors: donohue lkh.
Nat Commun. 2021 Mar 10;12(1):1569. doi: 10.1038/s41467-021-21623-4.
Nat Commun. 2021.
PMID: 33692367
Free PMC article.
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The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation.
Meyers JM, Ramanathan M, Shanderson RL, Beck A, Donohue L, Ferguson I, Guo MG, Rao DS, Miao W, Reynolds D, Yang X, Zhao Y, Yang YY, Blish C, Wang Y, Khavari PA.
Meyers JM, et al.
PLoS Pathog. 2021 Oct 1;17(10):e1009412. doi: 10.1371/journal.ppat.1009412. eCollection 2021 Oct.
PLoS Pathog. 2021.
PMID: 34597346
Free PMC article.
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The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation.
Kim DS, Risca VI, Reynolds DL, Chappell J, Rubin AJ, Jung N, Donohue LKH, Lopez-Pajares V, Kathiria A, Shi M, Zhao Z, Deep H, Sharmin M, Rao D, Lin S, Chang HY, Snyder MP, Greenleaf WJ, Kundaje A, Khavari PA.
Kim DS, et al. Among authors: donohue lkh.
Nat Genet. 2021 Nov;53(11):1564-1576. doi: 10.1038/s41588-021-00947-3. Epub 2021 Oct 14.
Nat Genet. 2021.
PMID: 34650237
Free PMC article.
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Integrative analyses highlight functional regulatory variants associated with neuropsychiatric diseases.
Guo MG, Reynolds DL, Ang CE, Liu Y, Zhao Y, Donohue LKH, Siprashvili Z, Yang X, Yoo Y, Mondal S, Hong A, Kain J, Meservey L, Fabo T, Elfaki I, Kellman LN, Abell NS, Pershad Y, Bayat V, Etminani P, Holodniy M, Geschwind DH, Montgomery SB, Duncan LE, Urban AE, Altman RB, Wernig M, Khavari PA.
Guo MG, et al. Among authors: donohue lkh.
Nat Genet. 2023 Nov;55(11):1876-1891. doi: 10.1038/s41588-023-01533-5. Epub 2023 Oct 19.
Nat Genet. 2023.
PMID: 37857935
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Highly specific and efficient CRISPR/Cas9-catalyzed homology-directed repair in Drosophila.
Gratz SJ, Ukken FP, Rubinstein CD, Thiede G, Donohue LK, Cummings AM, O'Connor-Giles KM.
Gratz SJ, et al.
Genetics. 2014 Apr;196(4):961-71. doi: 10.1534/genetics.113.160713. Epub 2014 Jan 29.
Genetics. 2014.
PMID: 24478335
Free PMC article.
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A B Cell Regulome Links Notch to Downstream Oncogenic Pathways in Small B Cell Lymphomas.
Ryan RJH, Petrovic J, Rausch DM, Zhou Y, Lareau CA, Kluk MJ, Christie AL, Lee WY, Tarjan DR, Guo B, Donohue LKH, Gillespie SM, Nardi V, Hochberg EP, Blacklow SC, Weinstock DM, Faryabi RB, Bernstein BE, Aster JC, Pear WS.
Ryan RJH, et al. Among authors: donohue lkh.
Cell Rep. 2017 Oct 17;21(3):784-797. doi: 10.1016/j.celrep.2017.09.066.
Cell Rep. 2017.
PMID: 29045844
Free PMC article.
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