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Direct inference and control of genetic population structure from RNA sequencing data.
Fachrul M, Karkey A, Shakya M, Judd LM, Harshegyi T, Sim KS, Tonks S, Dongol S, Shrestha R, Salim A; STRATAA study group; Baker S, Pollard AJ, Khor CC, Dolecek C, Basnyat B, Dunstan SJ, Holt KE, Inouye M. Fachrul M, et al. Among authors: dolecek c. Commun Biol. 2023 Aug 2;6(1):804. doi: 10.1038/s42003-023-05171-9. Commun Biol. 2023. PMID: 37532769 Free PMC article.
The STRATAA study protocol: a programme to assess the burden of enteric fever in Bangladesh, Malawi and Nepal using prospective population census, passive surveillance, serological studies and healthcare utilisation surveys.
Darton TC, Meiring JE, Tonks S, Khan MA, Khanam F, Shakya M, Thindwa D, Baker S, Basnyat B, Clemens JD, Dougan G, Dolecek C, Dunstan SJ, Gordon MA, Heyderman RS, Holt KE, Pitzer VE, Qadri F, Zaman K, Pollard AJ; STRATAA Study Consortium. Darton TC, et al. Among authors: dolecek c. BMJ Open. 2017 Jul 2;7(6):e016283. doi: 10.1136/bmjopen-2017-016283. BMJ Open. 2017. PMID: 28674145 Free PMC article.
A Bayesian approach for estimating typhoid fever incidence from large-scale facility-based passive surveillance data.
Phillips MT, Meiring JE, Voysey M, Warren JL, Baker S, Basnyat B, Clemens JD, Dolecek C, Dunstan SJ, Dougan G, Gordon MA, Thindwa D, Heyderman RS, Holt KE, Qadri F, Pollard AJ, Pitzer VE; STRATAA Study Group. Phillips MT, et al. Among authors: dolecek c. Stat Med. 2021 Nov 20;40(26):5853-5870. doi: 10.1002/sim.9159. Epub 2021 Aug 24. Stat Med. 2021. PMID: 34428309 Free PMC article.
Burden of enteric fever at three urban sites in Africa and Asia: a multicentre population-based study.
Meiring JE, Shakya M, Khanam F, Voysey M, Phillips MT, Tonks S, Thindwa D, Darton TC, Dongol S, Karkey A, Zaman K, Baker S, Dolecek C, Dunstan SJ, Dougan G, Holt KE, Heyderman RS, Qadri F, Pitzer VE, Basnyat B, Gordon MA, Clemens J, Pollard AJ; STRATAA Study Group. Meiring JE, et al. Among authors: dolecek c. Lancet Glob Health. 2021 Dec;9(12):e1688-e1696. doi: 10.1016/S2214-109X(21)00370-3. Lancet Glob Health. 2021. PMID: 34798028 Free PMC article.
The microbiological and clinical characteristics of invasive salmonella in gallbladders from cholecystectomy patients in kathmandu, Nepal.
Dongol S, Thompson CN, Clare S, Nga TV, Duy PT, Karkey A, Arjyal A, Koirala S, Khatri NS, Maskey P, Poudel S, Jaiswal VK, Vaidya S, Dougan G, Farrar JJ, Dolecek C, Basnyat B, Baker S. Dongol S, et al. Among authors: dolecek c. PLoS One. 2012;7(10):e47342. doi: 10.1371/journal.pone.0047342. Epub 2012 Oct 15. PLoS One. 2012. PMID: 23077595 Free PMC article.
Differential epidemiology of Salmonella Typhi and Paratyphi A in Kathmandu, Nepal: a matched case control investigation in a highly endemic enteric fever setting.
Karkey A, Thompson CN, Tran Vu Thieu N, Dongol S, Le Thi Phuong T, Voong Vinh P, Arjyal A, Martin LB, Rondini S, Farrar JJ, Dolecek C, Basnyat B, Baker S. Karkey A, et al. Among authors: dolecek c. PLoS Negl Trop Dis. 2013 Aug 22;7(8):e2391. doi: 10.1371/journal.pntd.0002391. eCollection 2013. PLoS Negl Trop Dis. 2013. PMID: 23991240 Free PMC article.
A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure.
Pham Thanh D, Karkey A, Dongol S, Ho Thi N, Thompson CN, Rabaa MA, Arjyal A, Holt KE, Wong V, Tran Vu Thieu N, Voong Vinh P, Ha Thanh T, Pradhan A, Shrestha SK, Gajurel D, Pickard D, Parry CM, Dougan G, Wolbers M, Dolecek C, Thwaites GE, Basnyat B, Baker S. Pham Thanh D, et al. Among authors: dolecek c. Elife. 2016 Mar 11;5:e14003. doi: 10.7554/eLife.14003. Elife. 2016. PMID: 26974227 Free PMC article. Clinical Trial.
95 results