Dohnálek J - Search Results

1

Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase.

Kouba T, Koval' T, Sudzinová P, Pospíšil J, Brezovská B, Hnilicová J, Šanderová H, Janoušková M, Šiková M, Halada P, Sýkora M, Barvík I, Nováček J, Trundová M, Dušková J, Skálová T, Chon U, Murakami KS, Dohnálek J, Krásný L. Kouba T, et al. Among authors: dohnalek j. Nat Commun. 2020 Dec 18;11(1):6419. doi: 10.1038/s41467-020-20158-4. Nat Commun. 2020. PMID: 33339823 Free PMC article.

2

Hydroxyethylamine isostere of an HIV-1 protease inhibitor prefers its amine to the hydroxy group in binding to catalytic aspartates. A synchrotron study of HIV-1 protease in complex with a peptidomimetic inhibitor.

Dohnálek J, Hasek J, Dusková J, Petroková H, Hradilek M, Soucek M, Konvalinka J, Brynda J, Sedlácek J, Fábry M. Dohnálek J, et al. J Med Chem. 2002 Mar 28;45(7):1432-8. doi: 10.1021/jm010979e. J Med Chem. 2002. PMID: 11906284

3

An ethylenamine inhibitor binds tightly to both wild type and mutant HIV-1 proteases. Structure and energy study.

Skálová T, Hasek J, Dohnálek J, Petroková H, Buchtelová E, Dusková J, Soucek M, Majer P, Uhlíková T, Konvalinka J. Skálová T, et al. Among authors: dohnalek j. J Med Chem. 2003 Apr 24;46(9):1636-44. doi: 10.1021/jm021079g. J Med Chem. 2003. PMID: 12699382

4

Role of hydroxyl group and R/S configuration of isostere in binding properties of HIV-1 protease inhibitors.

Petroková H, Dusková J, Dohnálek J, Skálová T, Vondrácková-Buchtelová E, Soucek M, Konvalinka J, Brynda J, Fábry M, Sedlácek J, Hasek J. Petroková H, et al. Among authors: dohnalek j. Eur J Biochem. 2004 Nov;271(22):4451-61. doi: 10.1111/j.1432-1033.2004.04384.x. Eur J Biochem. 2004. PMID: 15560786 Free article.

5

Cold-active beta-galactosidase from Arthrobacter sp. C2-2 forms compact 660 kDa hexamers: crystal structure at 1.9A resolution.

Skálová T, Dohnálek J, Spiwok V, Lipovová P, Vondrácková E, Petroková H, Dusková J, Strnad H, Králová B, Hasek J. Skálová T, et al. Among authors: dohnalek j. J Mol Biol. 2005 Oct 21;353(2):282-94. doi: 10.1016/j.jmb.2005.08.028. J Mol Biol. 2005. PMID: 16171818

6

Modelling of carbohydrate-aromatic interactions: ab initio energetics and force field performance.

Spiwok V, Lipovová P, Skálová T, Vondrácková E, Dohnálek J, Hasek J, Králová B. Spiwok V, et al. Among authors: dohnalek j. J Comput Aided Mol Des. 2005 Dec;19(12):887-901. doi: 10.1007/s10822-005-9033-z. Epub 2006 Apr 11. J Comput Aided Mol Des. 2005. PMID: 16607570

7

On the role of the R configuration of the reaction-intermediate isostere in HIV-1 protease-inhibitor binding: X-ray structure at 2.0 A resolution.

Dusková J, Dohnálek J, Skálová T, Petroková H, Vondrácková E, Hradílek M, Konvalinka J, Soucek M, Brynda J, Fábry M, Sedlácek J, Hasek J. Dusková J, et al. Among authors: dohnalek j. Acta Crystallogr D Biol Crystallogr. 2006 May;62(Pt 5):489-97. doi: 10.1107/S0907444906006718. Epub 2006 Apr 19. Acta Crystallogr D Biol Crystallogr. 2006. PMID: 16627941

8

4-acetamido-3,3,5,5-[2H4]-2,2,6,6-tetra([2H3]methyl)piperidin-1-yloxyl 0.33-hydrate.

Duskova J, Labsky J, Cisarova I, Skalova T, Dohnalek J, Hasek J. Duskova J, et al. Among authors: dohnalek j. Acta Crystallogr C. 2006 Sep;62(Pt 9):o563-6. doi: 10.1107/S0108270106024814. Epub 2006 Aug 11. Acta Crystallogr C. 2006. PMID: 16954643

9

HIV-1 protease mutations and inhibitor modifications monitored on a series of complexes. Structural basis for the effect of the A71V mutation on the active site.

Skalova T, Dohnalek J, Duskova J, Petrokova H, Hradílek M, Soucek M, Konvalinka J, Hasek J. Skalova T, et al. Among authors: dohnalek j. J Med Chem. 2006 Sep 21;49(19):5777-84. doi: 10.1021/jm0605583. J Med Chem. 2006. PMID: 16970402

10

Cold-active enzymes studied by comparative molecular dynamics simulation.

Spiwok V, Lipovová P, Skálová T, Dusková J, Dohnálek J, Hasek J, Russell NJ, Králová B. Spiwok V, et al. Among authors: dohnalek j. J Mol Model. 2007 Apr;13(4):485-97. doi: 10.1007/s00894-006-0164-5. Epub 2007 Jan 18. J Mol Model. 2007. PMID: 17235516

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