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Oncogenic Signaling Pathways in The Cancer Genome Atlas.
Sanchez-Vega F, Mina M, Armenia J, Chatila WK, Luna A, La KC, Dimitriadoy S, Liu DL, Kantheti HS, Saghafinia S, Chakravarty D, Daian F, Gao Q, Bailey MH, Liang WW, Foltz SM, Shmulevich I, Ding L, Heins Z, Ochoa A, Gross B, Gao J, Zhang H, Kundra R, Kandoth C, Bahceci I, Dervishi L, Dogrusoz U, Zhou W, Shen H, Laird PW, Way GP, Greene CS, Liang H, Xiao Y, Wang C, Iavarone A, Berger AH, Bivona TG, Lazar AJ, Hammer GD, Giordano T, Kwong LN, McArthur G, Huang C, Tward AD, Frederick MJ, McCormick F, Meyerson M; Cancer Genome Atlas Research Network; Van Allen EM, Cherniack AD, Ciriello G, Sander C, Schultz N. Sanchez-Vega F, et al. Among authors: dogrusoz u. Cell. 2018 Apr 5;173(2):321-337.e10. doi: 10.1016/j.cell.2018.03.035. Cell. 2018. PMID: 29625050 Free PMC article.
Discovering modulators of gene expression.
Babur O, Demir E, Gönen M, Sander C, Dogrusoz U. Babur O, et al. Among authors: dogrusoz u. Nucleic Acids Res. 2010 Sep;38(17):5648-56. doi: 10.1093/nar/gkq287. Epub 2010 May 13. Nucleic Acids Res. 2010. PMID: 20466809 Free PMC article.
Integrating biological pathways and genomic profiles with ChiBE 2.
Babur Ö, Dogrusoz U, Çakır M, Aksoy BA, Schultz N, Sander C, Demir E. Babur Ö, et al. Among authors: dogrusoz u. BMC Genomics. 2014 Aug 3;15(1):642. doi: 10.1186/1471-2164-15-642. BMC Genomics. 2014. PMID: 25086704 Free PMC article.
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.
Rodchenkov I, Babur O, Luna A, Aksoy BA, Wong JV, Fong D, Franz M, Siper MC, Cheung M, Wrana M, Mistry H, Mosier L, Dlin J, Wen Q, O'Callaghan C, Li W, Elder G, Smith PT, Dallago C, Cerami E, Gross B, Dogrusoz U, Demir E, Bader GD, Sander C. Rodchenkov I, et al. Among authors: dogrusoz u. Nucleic Acids Res. 2020 Jan 8;48(D1):D489-D497. doi: 10.1093/nar/gkz946. Nucleic Acids Res. 2020. PMID: 31647099 Free PMC article.
34 results