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Unsupervised and Supervised Learning over theEnergy Landscape for Protein Decoy Selection.
Biomolecules. 2019 Oct 14;9(10):607. doi: 10.3390/biom9100607.
Biomolecules. 2019.
PMID: 31615116
Free PMC article.
Decoy selection for protein structure prediction via extreme gradient boosting and ranking.
Akhter N, Chennupati G, Djidjev H, Shehu A.
Akhter N, et al. Among authors: djidjev h.
BMC Bioinformatics. 2020 Dec 9;21(Suppl 1):189. doi: 10.1186/s12859-020-3523-9.
BMC Bioinformatics. 2020.
PMID: 33297949
Free PMC article.
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Improved Protein Decoy Selection via Non-Negative Matrix Factorization.
Akhter N, Kabir KL, Chennupati G, Vangara R, Alexandrov BS, Djidjev H, Shehu A.
Akhter N, et al. Among authors: djidjev h.
IEEE/ACM Trans Comput Biol Bioinform. 2022 May-Jun;19(3):1670-1682. doi: 10.1109/TCBB.2020.3049088. Epub 2022 Jun 3.
IEEE/ACM Trans Comput Biol Bioinform. 2022.
PMID: 33400654
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Quantum annealing algorithms for Boolean tensor networks.
Pelofske E, Hahn G, O'Malley D, Djidjev HN, Alexandrov BS.
Pelofske E, et al. Among authors: djidjev hn.
Sci Rep. 2022 May 20;12(1):8539. doi: 10.1038/s41598-022-12611-9.
Sci Rep. 2022.
PMID: 35595786
Free PMC article.
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Complete assembly of circular and chloroplast genomes based on global optimization.
Andonov R, Djidjev H, François S, Lavenier D.
Andonov R, et al. Among authors: djidjev h.
J Bioinform Comput Biol. 2019 Jun;17(3):1950014. doi: 10.1142/S0219720019500148.
J Bioinform Comput Biol. 2019.
PMID: 31288643
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Parallel quantum annealing.
Pelofske E, Hahn G, Djidjev HN.
Pelofske E, et al. Among authors: djidjev hn.
Sci Rep. 2022 Mar 16;12(1):4499. doi: 10.1038/s41598-022-08394-8.
Sci Rep. 2022.
PMID: 35296721
Free PMC article.
Item in Clipboard
Graph-based linear scaling electronic structure theory.
Niklasson AM, Mniszewski SM, Negre CF, Cawkwell MJ, Swart PJ, Mohd-Yusof J, Germann TC, Wall ME, Bock N, Rubensson EH, Djidjev H.
Niklasson AM, et al. Among authors: djidjev h.
J Chem Phys. 2016 Jun 21;144(23):234101. doi: 10.1063/1.4952650.
J Chem Phys. 2016.
PMID: 27334148
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Initial State Encoding via Reverse Quantum Annealing and H-Gain Features.
Pelofske E, Hahn G, Djidjev H.
Pelofske E, et al. Among authors: djidjev h.
IEEE Trans Quantum Eng. 2023;4:3102221. doi: 10.1109/tqe.2023.3319586. Epub 2023 Sep 27.
IEEE Trans Quantum Eng. 2023.
PMID: 38179578
Free PMC article.
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