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Analysis of Escherichia coli O157 strains in cattle and humans between Scotland and England & Wales: implications for human health.
Chase-Topping M, Dallman TJ, Allison L, Lupolova N, Matthews L, Mitchell S, Banks CJ, Prentice J, Brown H, Tongue S, Henry M, Evans J, Gunn G, Hoyle D, McNeilly TN, Fitzgerald S, Smith-Palmer A, Shaaban S, Holmes A, Hanson M, Woolhouse M, Didelot X, Jenkins C, Gally DL. Chase-Topping M, et al. Among authors: didelot x. Microb Genom. 2023 Sep;9(9):001090. doi: 10.1099/mgen.0.001090. Microb Genom. 2023. PMID: 37672388 Free PMC article.
Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes.
Vieira A, Wan Y, Ryan Y, Li HK, Guy RL, Papangeli M, Huse KK, Reeves LC, Soo VWC, Daniel R, Harley A, Broughton K, Dhami C, Ganner M, Ganner MA, Mumin Z, Razaei M, Rundberg E, Mammadov R, Mills EA, Sgro V, Mok KY, Didelot X, Croucher NJ, Jauneikaite E, Lamagni T, Brown CS, Coelho J, Sriskandan S. Vieira A, et al. Among authors: didelot x. Nat Commun. 2024 May 10;15(1):3916. doi: 10.1038/s41467-024-47929-7. Nat Commun. 2024. PMID: 38729927 Free PMC article.
Presence of phage-plasmids in multiple serovars of Salmonella enterica.
Nair S, Barker CR, Bird M, Greig DR, Collins C, Painset A, Chattaway M, Pickard D, Larkin L, Gharbia S, Didelot X, Ribeca P. Nair S, et al. Among authors: didelot x. Microb Genom. 2024 May;10(5). doi: 10.1099/mgen.0.001247. Microb Genom. 2024. PMID: 38717818 Free article.
Epistasis, core-genome disharmony, and adaptation in recombining bacteria.
Taylor AJ, Yahara K, Pascoe B, Ko S, Mageiros L, Mourkas E, Calland JK, Puranen S, Hitchings MD, Jolley KA, Kobras CM, Bayliss S, Williams NJ, van Vliet AHM, Parkhill J, Maiden MCJ, Corander J, Hurst LD, Falush D, Keim P, Didelot X, Kelly DJ, Sheppard SK. Taylor AJ, et al. Among authors: didelot x. mBio. 2024 Apr 29:e0058124. doi: 10.1128/mbio.00581-24. Online ahead of print. mBio. 2024. PMID: 38683013 Free article.
RecGraph: recombination-aware alignment of sequences to variation graphs.
Avila Cartes J, Bonizzoni P, Ciccolella S, Della Vedova G, Denti L, Didelot X, Monti D, Pirola Y. Avila Cartes J, et al. Among authors: didelot x. Bioinformatics. 2024 Apr 27:btae292. doi: 10.1093/bioinformatics/btae292. Online ahead of print. Bioinformatics. 2024. PMID: 38676570
179 results