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Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany.
Abdel-Glil MY, Hotzel H, Tomaso H, Didelot X, Brandt C, Seyboldt C, Linde J, Schwarz S, Neubauer H, El-Adawy H. Abdel-Glil MY, et al. Among authors: didelot x. Front Vet Sci. 2023 Jan 19;9:1069062. doi: 10.3389/fvets.2022.1069062. eCollection 2022. Front Vet Sci. 2023. PMID: 36744226 Free PMC article.
Phylogenetic analysis of the origin and spread of plague in Madagascar.
Esquivel Gomez LR, Savin C, Andrianaivoarimanana V, Rahajandraibe S, Randriantseheno LN, Zhou Z, Kocher A, Didelot X, Rajerison M, Kühnert D. Esquivel Gomez LR, et al. Among authors: didelot x. PLoS Negl Trop Dis. 2023 May 1;17(5):e0010362. doi: 10.1371/journal.pntd.0010362. eCollection 2023 May. PLoS Negl Trop Dis. 2023. PMID: 37126517 Free PMC article.
Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes.
Vieira A, Wan Y, Ryan Y, Li HK, Guy RL, Papangeli M, Huse KK, Reeves LC, Soo VWC, Daniel R, Harley A, Broughton K, Dhami C, Ganner M, Ganner MA, Mumin Z, Razaei M, Rundberg E, Mammadov R, Mills EA, Sgro V, Mok KY, Didelot X, Croucher NJ, Jauneikaite E, Lamagni T, Brown CS, Coelho J, Sriskandan S. Vieira A, et al. Among authors: didelot x. Nat Commun. 2024 May 10;15(1):3916. doi: 10.1038/s41467-024-47929-7. Nat Commun. 2024. PMID: 38729927 Free PMC article.
Presence of phage-plasmids in multiple serovars of Salmonella enterica.
Nair S, Barker CR, Bird M, Greig DR, Collins C, Painset A, Chattaway M, Pickard D, Larkin L, Gharbia S, Didelot X, Ribeca P. Nair S, et al. Among authors: didelot x. Microb Genom. 2024 May;10(5). doi: 10.1099/mgen.0.001247. Microb Genom. 2024. PMID: 38717818 Free article.
Epistasis, core-genome disharmony, and adaptation in recombining bacteria.
Taylor AJ, Yahara K, Pascoe B, Ko S, Mageiros L, Mourkas E, Calland JK, Puranen S, Hitchings MD, Jolley KA, Kobras CM, Bayliss S, Williams NJ, van Vliet AHM, Parkhill J, Maiden MCJ, Corander J, Hurst LD, Falush D, Keim P, Didelot X, Kelly DJ, Sheppard SK. Taylor AJ, et al. Among authors: didelot x. mBio. 2024 Apr 29:e0058124. doi: 10.1128/mbio.00581-24. Online ahead of print. mBio. 2024. PMID: 38683013 Free article.
RecGraph: recombination-aware alignment of sequences to variation graphs.
Avila Cartes J, Bonizzoni P, Ciccolella S, Della Vedova G, Denti L, Didelot X, Monti D, Pirola Y. Avila Cartes J, et al. Among authors: didelot x. Bioinformatics. 2024 Apr 27:btae292. doi: 10.1093/bioinformatics/btae292. Online ahead of print. Bioinformatics. 2024. PMID: 38676570
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes.
Wan Y, Myall AC, Boonyasiri A, Bolt F, Ledda A, Mookerjee S, Weiße AY, Getino M, Turton JF, Abbas H, Prakapaite R, Sabnis A, Abdolrasouli A, Malpartida-Cardenas K, Miglietta L, Donaldson H, Gilchrist M, Hopkins KL, Ellington MJ, Otter JA, Larrouy-Maumus G, Edwards AM, Rodriguez-Manzano J, Didelot X, Barahona M, Holmes AH, Jauneikaite E, Davies F. Wan Y, et al. Among authors: didelot x. J Infect Dis. 2024 Jan 20:jiae019. doi: 10.1093/infdis/jiae019. Online ahead of print. J Infect Dis. 2024. PMID: 38245822
179 results