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Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions.
Cattoni DI, Cardozo Gizzi AM, Georgieva M, Di Stefano M, Valeri A, Chamousset D, Houbron C, Déjardin S, Fiche JB, González I, Chang JM, Sexton T, Marti-Renom MA, Bantignies F, Cavalli G, Nollmann M. Cattoni DI, et al. Among authors: di stefano m. Nat Commun. 2017 Nov 24;8(1):1753. doi: 10.1038/s41467-017-01962-x. Nat Commun. 2017. PMID: 29170434 Free PMC article.
Restraint-based three-dimensional modeling of genomes and genomic domains.
Serra F, Di Stefano M, Spill YG, Cuartero Y, Goodstadt M, Baù D, Marti-Renom MA. Serra F, et al. Among authors: di stefano m. FEBS Lett. 2015 Oct 7;589(20 Pt A):2987-95. doi: 10.1016/j.febslet.2015.05.012. Epub 2015 May 14. FEBS Lett. 2015. PMID: 25980604 Free article. Review.
Hierarchical chromatin organization detected by TADpole.
Soler-Vila P, Cuscó P, Farabella I, Di Stefano M, Marti-Renom MA. Soler-Vila P, et al. Among authors: di stefano m. Nucleic Acids Res. 2020 Apr 17;48(7):e39. doi: 10.1093/nar/gkaa087. Nucleic Acids Res. 2020. PMID: 32083658 Free PMC article.
4D nucleome modeling.
Di Stefano M, Paulsen J, Jost D, Marti-Renom MA. Di Stefano M, et al. Curr Opin Genet Dev. 2021 Apr;67:25-32. doi: 10.1016/j.gde.2020.10.004. Epub 2020 Nov 27. Curr Opin Genet Dev. 2021. PMID: 33253996 Free PMC article. Review.
Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation.
Vilarrasa-Blasi R, Soler-Vila P, Verdaguer-Dot N, Russiñol N, Di Stefano M, Chapaprieta V, Clot G, Farabella I, Cuscó P, Kulis M, Agirre X, Prosper F, Beekman R, Beà S, Colomer D, Stunnenberg HG, Gut I, Campo E, Marti-Renom MA, Martin-Subero JI. Vilarrasa-Blasi R, et al. Among authors: di stefano m. Nat Commun. 2021 Jan 28;12(1):651. doi: 10.1038/s41467-020-20849-y. Nat Commun. 2021. PMID: 33510161 Free PMC article.
3D reconstruction of genomic regions from sparse interaction data.
Mendieta-Esteban J, Di Stefano M, Castillo D, Farabella I, Marti-Renom MA. Mendieta-Esteban J, et al. Among authors: di stefano m. NAR Genom Bioinform. 2021 Mar 22;3(1):lqab017. doi: 10.1093/nargab/lqab017. eCollection 2021 Mar. NAR Genom Bioinform. 2021. PMID: 33778492 Free PMC article.
538 results