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53 results

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Page 1
An associative memory Hamiltonian model for DNA and nucleosomes.
Lu W, Onuchic JN, Di Pierro M. Lu W, et al. Among authors: di pierro m. PLoS Comput Biol. 2023 Mar 27;19(3):e1011013. doi: 10.1371/journal.pcbi.1011013. eCollection 2023 Mar. PLoS Comput Biol. 2023. PMID: 36972316 Free PMC article.
Transferable model for chromosome architecture.
Di Pierro M, Zhang B, Aiden EL, Wolynes PG, Onuchic JN. Di Pierro M, et al. Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12168-12173. doi: 10.1073/pnas.1613607113. Epub 2016 Sep 29. Proc Natl Acad Sci U S A. 2016. PMID: 27688758 Free PMC article.
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pękowska A, Rao SSP, Kieffer-Kwon KR, Jung S, Baranello L, Huang SC, El Khattabi L, Dose M, Pruett N, Sanborn AL, Canela A, Maman Y, Oksanen A, Resch W, Li X, Lee B, Kovalchuk AL, Tang Z, Nelson S, Di Pierro M, Cheng RR, Machol I, St Hilaire BG, Durand NC, Shamim MS, Stamenova EK, Onuchic JN, Ruan Y, Nussenzweig A, Levens D, Aiden EL, Casellas R. Vian L, et al. Among authors: di pierro m. Cell. 2018 May 17;173(5):1165-1178.e20. doi: 10.1016/j.cell.2018.03.072. Epub 2018 Apr 26. Cell. 2018. PMID: 29706548 Free PMC article.
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pękowska A, Rao SSP, Kieffer-Kwon KR, Jung S, Baranello L, Huang SC, El Khattabi L, Dose M, Pruett N, Sanborn AL, Canela A, Maman Y, Oksanen A, Resch W, Li X, Lee B, Kovalchuk AL, Tang Z, Nelson S, Di Pierro M, Cheng RR, Machol I, St Hilaire BG, Durand NC, Shamim MS, Stamenova EK, Onuchic JN, Ruan Y, Nussenzweig A, Levens D, Aiden EL, Casellas R. Vian L, et al. Among authors: di pierro m. Cell. 2018 Sep 20;175(1):292-294. doi: 10.1016/j.cell.2018.09.002. Cell. 2018. PMID: 30241609 Free PMC article. No abstract available.
Deciphering the structure of the condensin protein complex.
Krepel D, Cheng RR, Di Pierro M, Onuchic JN. Krepel D, et al. Among authors: di pierro m. Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):11911-11916. doi: 10.1073/pnas.1812770115. Epub 2018 Nov 1. Proc Natl Acad Sci U S A. 2018. PMID: 30385633 Free PMC article.
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.
Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SD, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, Russell S, Durand NC, Rao SSP, Kishi JY, Soler-Vila P, Di Pierro M, Onuchic JN, Callahan SP, Schreiner JM, Stuckey JA, Yin P, Aiden EL, Marti-Renom MA, Wu CT. Nir G, et al. Among authors: di pierro m. PLoS Genet. 2018 Dec 26;14(12):e1007872. doi: 10.1371/journal.pgen.1007872. eCollection 2018 Dec. PLoS Genet. 2018. PMID: 30586358 Free PMC article.
53 results