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Page 1
GENCODE 2021.
Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong J, Barnes I, Berry A, Bignell A, Boix C, Carbonell Sala S, Cunningham F, Di Domenico T, Donaldson S, Fiddes IT, García Girón C, Gonzalez JM, Grego T, Hardy M, Hourlier T, Howe KL, Hunt T, Izuogu OG, Johnson R, Martin FJ, Martínez L, Mohanan S, Muir P, Navarro FCP, Parker A, Pei B, Pozo F, Riera FC, Ruffier M, Schmitt BM, Stapleton E, Suner MM, Sycheva I, Uszczynska-Ratajczak B, Wolf MY, Xu J, Yang YT, Yates A, Zerbino D, Zhang Y, Choudhary JS, Gerstein M, Guigó R, Hubbard TJP, Kellis M, Paten B, Tress ML, Flicek P. Frankish A, et al. Among authors: di domenico t. Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923. doi: 10.1093/nar/gkaa1087. Nucleic Acids Res. 2021. PMID: 33270111 Free PMC article.
GENCODE reference annotation for the human and mouse genomes.
Frankish A, Diekhans M, Ferreira AM, Johnson R, Jungreis I, Loveland J, Mudge JM, Sisu C, Wright J, Armstrong J, Barnes I, Berry A, Bignell A, Carbonell Sala S, Chrast J, Cunningham F, Di Domenico T, Donaldson S, Fiddes IT, García Girón C, Gonzalez JM, Grego T, Hardy M, Hourlier T, Hunt T, Izuogu OG, Lagarde J, Martin FJ, Martínez L, Mohanan S, Muir P, Navarro FCP, Parker A, Pei B, Pozo F, Ruffier M, Schmitt BM, Stapleton E, Suner MM, Sycheva I, Uszczynska-Ratajczak B, Xu J, Yates A, Zerbino D, Zhang Y, Aken B, Choudhary JS, Gerstein M, Guigó R, Hubbard TJP, Kellis M, Paten B, Reymond A, Tress ML, Flicek P. Frankish A, et al. Among authors: di domenico t. Nucleic Acids Res. 2019 Jan 8;47(D1):D766-D773. doi: 10.1093/nar/gky955. Nucleic Acids Res. 2019. PMID: 30357393 Free PMC article.
An analysis of tissue-specific alternative splicing at the protein level.
Rodriguez JM, Pozo F, di Domenico T, Vazquez J, Tress ML. Rodriguez JM, et al. Among authors: di domenico t. PLoS Comput Biol. 2020 Oct 5;16(10):e1008287. doi: 10.1371/journal.pcbi.1008287. eCollection 2020 Oct. PLoS Comput Biol. 2020. PMID: 33017396 Free PMC article.
APPRIS 2017: principal isoforms for multiple gene sets.
Rodriguez JM, Rodriguez-Rivas J, Di Domenico T, Vázquez J, Valencia A, Tress ML. Rodriguez JM, et al. Among authors: di domenico t. Nucleic Acids Res. 2018 Jan 4;46(D1):D213-D217. doi: 10.1093/nar/gkx997. Nucleic Acids Res. 2018. PMID: 29069475 Free PMC article.
APPRIS: selecting functionally important isoforms.
Rodriguez JM, Pozo F, Cerdán-Vélez D, Di Domenico T, Vázquez J, Tress ML. Rodriguez JM, et al. Among authors: di domenico t. Nucleic Acids Res. 2022 Jan 7;50(D1):D54-D59. doi: 10.1093/nar/gkab1058. Nucleic Acids Res. 2022. PMID: 34755885 Free PMC article.
Assessing the functional relevance of splice isoforms.
Pozo F, Martinez-Gomez L, Walsh TA, Rodriguez JM, Di Domenico T, Abascal F, Vazquez J, Tress ML. Pozo F, et al. Among authors: di domenico t. NAR Genom Bioinform. 2021 May 22;3(2):lqab044. doi: 10.1093/nargab/lqab044. eCollection 2021 Jun. NAR Genom Bioinform. 2021. PMID: 34046593 Free PMC article.
ISCB computational biology Wikipedia competition.
Bateman A, Kelso J, Mietchen D, Macintyre G, Di Domenico T, Abeel T, Logan DW, Radivojac P, Rost B. Bateman A, et al. Among authors: di domenico t. PLoS Comput Biol. 2013;9(9):e1003242. doi: 10.1371/journal.pcbi.1003242. Epub 2013 Sep 19. PLoS Comput Biol. 2013. PMID: 24068913 Free PMC article. No abstract available.
vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer.
Perales-Patón J, Di Domenico T, Fustero-Torre C, Piñeiro-Yáñez E, Carretero-Puche C, Tejero H, Valencia A, Gómez-López G, Al-Shahrour F. Perales-Patón J, et al. Among authors: di domenico t. Bioinformatics. 2019 Nov 1;35(22):4846-4848. doi: 10.1093/bioinformatics/btz465. Bioinformatics. 2019. PMID: 31173067 Free PMC article.
34 results