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A guided tour of the Trans-Proteomic Pipeline.
Deutsch EW, Mendoza L, Shteynberg D, Farrah T, Lam H, Tasman N, Sun Z, Nilsson E, Pratt B, Prazen B, Eng JK, Martin DB, Nesvizhskii AI, Aebersold R. Deutsch EW, et al. Proteomics. 2010 Mar;10(6):1150-9. doi: 10.1002/pmic.200900375. Proteomics. 2010. PMID: 20101611 Free PMC article. Review.
TraML--a standard format for exchange of selected reaction monitoring transition lists.
Deutsch EW, Chambers M, Neumann S, Levander F, Binz PA, Shofstahl J, Campbell DS, Mendoza L, Ovelleiro D, Helsens K, Martens L, Aebersold R, Moritz RL, Brusniak MY. Deutsch EW, et al. Mol Cell Proteomics. 2012 Apr;11(4):R111.015040. doi: 10.1074/mcp.R111.015040. Epub 2011 Dec 12. Mol Cell Proteomics. 2012. PMID: 22159873 Free PMC article.
PASSEL: the PeptideAtlas SRMexperiment library.
Farrah T, Deutsch EW, Kreisberg R, Sun Z, Campbell DS, Mendoza L, Kusebauch U, Brusniak MY, Hüttenhain R, Schiess R, Selevsek N, Aebersold R, Moritz RL. Farrah T, et al. Among authors: deutsch ew. Proteomics. 2012 Apr;12(8):1170-5. doi: 10.1002/pmic.201100515. Proteomics. 2012. PMID: 22318887 Free PMC article.
A Bovine PeptideAtlas of milk and mammary gland proteomes.
Bislev SL, Deutsch EW, Sun Z, Farrah T, Aebersold R, Moritz RL, Bendixen E, Codrea MC. Bislev SL, et al. Among authors: deutsch ew. Proteomics. 2012 Sep;12(18):2895-9. doi: 10.1002/pmic.201200057. Proteomics. 2012. PMID: 22837157 Free PMC article.
186 results