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Advances and Utility of the Human Plasma Proteome.
Deutsch EW, Omenn GS, Sun Z, Maes M, Pernemalm M, Palaniappan KK, Letunica N, Vandenbrouck Y, Brun V, Tao SC, Yu X, Geyer PE, Ignjatovic V, Moritz RL, Schwenk JM. Deutsch EW, et al. J Proteome Res. 2021 Dec 3;20(12):5241-5263. doi: 10.1021/acs.jproteome.1c00657. Epub 2021 Oct 21. J Proteome Res. 2021. PMID: 34672606 Free PMC article. Review.
A common open representation of mass spectrometry data and its application to proteomics research.
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. Pedrioli PG, et al. Among authors: deutsch ew. Nat Biotechnol. 2004 Nov;22(11):1459-66. doi: 10.1038/nbt1031. Nat Biotechnol. 2004. PMID: 15529173
Human Plasma PeptideAtlas.
Deutsch EW, Eng JK, Zhang H, King NL, Nesvizhskii AI, Lin B, Lee H, Yi EC, Ossola R, Aebersold R. Deutsch EW, et al. Proteomics. 2005 Aug;5(13):3497-500. doi: 10.1002/pmic.200500160. Proteomics. 2005. PMID: 16052627
A mouse plasma peptide atlas as a resource for disease proteomics.
Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, Depinho RA, Bardeesy N, Dinulescu D, Hung KE, Kucherlapati R, Jacks T, Politi K, Aebersold R, Omenn GS, States DJ, Hanash SM. Zhang Q, et al. Among authors: deutsch ew. Genome Biol. 2008;9(6):R93. doi: 10.1186/gb-2008-9-6-r93. Epub 2008 Jun 3. Genome Biol. 2008. PMID: 18522751 Free PMC article.
A guided tour of the Trans-Proteomic Pipeline.
Deutsch EW, Mendoza L, Shteynberg D, Farrah T, Lam H, Tasman N, Sun Z, Nilsson E, Pratt B, Prazen B, Eng JK, Martin DB, Nesvizhskii AI, Aebersold R. Deutsch EW, et al. Proteomics. 2010 Mar;10(6):1150-9. doi: 10.1002/pmic.200900375. Proteomics. 2010. PMID: 20101611 Free PMC article. Review.
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.
Brusniak MY, Kwok ST, Christiansen M, Campbell D, Reiter L, Picotti P, Kusebauch U, Ramos H, Deutsch EW, Chen J, Moritz RL, Aebersold R. Brusniak MY, et al. Among authors: deutsch ew. BMC Bioinformatics. 2011 Mar 18;12:78. doi: 10.1186/1471-2105-12-78. BMC Bioinformatics. 2011. PMID: 21414234 Free PMC article.
188 results